View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3678_low_50 (Length: 241)

Name: NF3678_low_50
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3678_low_50
NF3678_low_50
[»] chr7 (3 HSPs)
chr7 (20-226)||(35101348-35101554)
chr7 (20-226)||(35075233-35075441)
chr7 (30-68)||(34989016-34989054)
[»] chr6 (3 HSPs)
chr6 (67-206)||(441057-441196)
chr6 (74-172)||(6717468-6717566)
chr6 (88-160)||(25000534-25000606)
[»] chr1 (2 HSPs)
chr1 (35-165)||(36462241-36462374)
chr1 (78-172)||(37905257-37905351)
[»] scaffold0521 (1 HSPs)
scaffold0521 (74-172)||(3604-3702)
[»] chr8 (3 HSPs)
chr8 (74-172)||(18289391-18289489)
chr8 (74-172)||(23098826-23098924)
chr8 (74-172)||(27064140-27064238)
[»] chr4 (4 HSPs)
chr4 (74-172)||(34337804-34337902)
chr4 (88-160)||(40884310-40884382)
chr4 (88-160)||(40910396-40910468)
chr4 (88-160)||(40911536-40911608)
[»] chr3 (2 HSPs)
chr3 (108-172)||(40818070-40818134)
chr3 (78-172)||(18203845-18203939)
[»] chr5 (2 HSPs)
chr5 (74-172)||(21268051-21268148)
chr5 (131-206)||(16679471-16679546)
[»] scaffold0252 (1 HSPs)
scaffold0252 (74-172)||(24348-24449)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 35101348 - 35101554
Alignment:
Q  20 ctattcccttatatgttttcgtccatctaactaattcatttcatacttctaattctattttagaaaacatggttggcagaaacattgaaactcttttgtc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  35101348 ctattcccttatatgttttcgtccatctaactaattcatttcatacttctaattctattttagaaaacatggtcagcagaaacattgaaactcttttgtc 35101447  T
Q  120 gtatcactgcctaactggtaaacatttgaacacatattcatttaatgtaattannnnnnngttgcagtttatacataacagaaatttaatttcactttca 219  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||    
T  35101448 gtatcactgcctaactgataaacatttgaacacatattcatttaatgtaattatttttttgttgcggtttatacataacagaaatttaatttcactttca 35101547  T
Q  220 tcctttg 226  Q
    | |||||    
T  35101548 ttctttg 35101554  T

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Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 35075233 - 35075441
Alignment:
Q  20 ctattcccttatatgttttcgtccatctaactaattcatttcatacttctaattctattttagaaaacatggtt--ggcagaaacattgaaactcttttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||    
T  35075233 ctattcccttatatgttttcgtccatctaactaattcatttcatacttctaattctattttaaaaaacatggtgtcggcagaaacattgaaactcttttg 35075332  T
Q  118 tcgtatcactgcctaactggtaaacatttgaacacatattcatttaatgtaattannnnnnngttgcagtttatacataacagaaatttaatttcacttt 217  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||       ||||| |||||||| |||||||||||||||||||||||    
T  35075333 tcgtatcactgcctaactggtaaacgtttgaacacatattcatttaatgtaattatttttttgttgcggtttatacgtaacagaaatttaatttcacttt 35075432  T
Q  218 catcctttg 226  Q
    ||| |||||    
T  35075433 cattctttg 35075441  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 34989054 - 34989016
Alignment:
Q  30 atatgttttcgtccatctaactaattcatttcatacttc 68  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  34989054 atatgctttcctccatctaactaattcatttcatacttc 34989016  T

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Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 67 - 206
Target Start/End: Original strand, 441057 - 441196
Alignment:
Q  67 tctaattctattttagaaaacatggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcatttaatg 166  Q
    |||| ||||||||||||||||||||  | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||     
T  441057 tctagttctattttagaaaacatggccgacagaaacattgaaactctcttgtcgtatcactgcctaactggtaaacatttgaacacatatttctttaata 441156  T
Q  167 taattannnnnnngttgcagtttatacataacagaaattt 206  Q
    ||||||       ||||| |||||||||||||||||||||    
T  441157 taattatttttttgttgccgtttatacataacagaaattt 441196  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 6717468 - 6717566
Alignment:
Q  74 ctattttagaaaacatggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcatttaatgtaatta 172  Q
    ||||||||||||||||||  ||||  || || |||||||||||||||||||||| |||||||||||||| ||| || |||||||| |||||| ||||||    
T  6717468 ctattttagaaaacatggccggcatcaatatagaaactcttttgtcgtatcactacctaactggtaaactttttaatacatattcctttaatctaatta 6717566  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 25000534 - 25000606
Alignment:
Q  88 atggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcat 160  Q
    |||| ||| |||||||| ||||||||  | || ||||||||||| ||||||||||| || |||||||||||||    
T  25000534 atggctggaagaaacatagaaactctcctctcctatcactgcctgactggtaaacacttcaacacatattcat 25000606  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 36462241 - 36462374
Alignment:
Q  35 ttttcgtccatctaactaattcatttcatact---tctaattctattttagaaaacatggttggcagaaacattgaaactcttttgtcgtatcactgcct 131  Q
    ||||| ||||||||||||||||||| ||||||   |||||||||||||||||||||||||  | || |||| ||||||||||| |||| ||| |||||||    
T  36462241 ttttcctccatctaactaattcattgcatactaactctaattctattttagaaaacatggccgccataaacgttgaaactcttctgtcatattactgcct 36462340  T
Q  132 aactggtaaacatttgaacacatattcatttaat 165  Q
    |||||| ||||||||||| |||||||| ||||||    
T  36462341 aactggaaaacatttgaatacatattcctttaat 36462374  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 37905351 - 37905257
Alignment:
Q  78 tttagaaaacatggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcatttaatgtaatta 172  Q
    ||||||||||||||  |||| ||| || || ||||||||||| |||||||||||||| ||||||| ||| ||||||||||| |||||| ||||||    
T  37905351 tttagaaaacatggccggcataaatatagagactcttttgtcctatcactgcctaaccggtaaactttttaacacatattcctttaatctaatta 37905257  T

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Target: scaffold0521 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 3702 - 3604
Alignment:
Q  74 ctattttagaaaacatggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcatttaatgtaatta 172  Q
    |||||||||||||||||| ||||| ||| || || ||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||    
T  3702 ctattttagaaaacatggctggcataaatatagagactcttttgtcctatcactgcctaactggtaaactttttaacacatattcctttaatctaatta 3604  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 18289489 - 18289391
Alignment:
Q  74 ctattttagaaaacatggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcatttaatgtaatta 172  Q
    |||||||||||||||||| ||||| ||| || || ||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||    
T  18289489 ctattttagaaaacatggctggcataaatatagagactcttttgtcctatcactgcctaactggtaaactttttaacacatattcctttaatctaatta 18289391  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 23098826 - 23098924
Alignment:
Q  74 ctattttagaaaacatggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcatttaatgtaatta 172  Q
    ||||||||||||||||||  |||| ||| || |||||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||| ||||||    
T  23098826 ctattttagaaaacatggccggcataaatatagaaactcttttgtcgtatcactacctaactggtaaactttttaacacatattcctttaatctaatta 23098924  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 27064238 - 27064140
Alignment:
Q  74 ctattttagaaaacatggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcatttaatgtaatta 172  Q
    ||||||||||||||||||  |||| ||| || |||||||||||||||| ||||||||||| |||||||| ||| ||||||||||| |||||| ||||||    
T  27064238 ctattttagaaaacatggccggcataaatatagaaactcttttgtcgtctcactgcctaattggtaaactttttaacacatattcctttaatctaatta 27064140  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 34337804 - 34337902
Alignment:
Q  74 ctattttagaaaacatggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcatttaatgtaatta 172  Q
    ||||||||||||||||||  | || ||| || ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||    
T  34337804 ctattttagaaaacatggccgacataaatatagaaactcttttgtcgtatcactgcctaactggtaaactttttaacacatattcctttaatctaatta 34337902  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 40884310 - 40884382
Alignment:
Q  88 atggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcat 160  Q
    |||| ||| |||||||| ||||||||  | || ||||||||||| ||||||||||| || |||||||||||||    
T  40884310 atggctggaagaaacatagaaactctcctctcctatcactgcctgactggtaaacacttcaacacatattcat 40884382  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 40910396 - 40910468
Alignment:
Q  88 atggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcat 160  Q
    |||| ||| |||||||| ||||||||  | || ||||||||| | ||||||||||| || |||||||||||||    
T  40910396 atggctggaagaaacatagaaactctcctctcctatcactgcatgactggtaaacacttcaacacatattcat 40910468  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 40911608 - 40911536
Alignment:
Q  88 atggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcat 160  Q
    |||| ||| |||||||| ||||||||  | || ||||||||| | ||||||||||| || |||||||||||||    
T  40911608 atggctggaagaaacatagaaactctcctctcctatcactgcttgactggtaaacacttcaacacatattcat 40911536  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 40818070 - 40818134
Alignment:
Q  108 aactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcatttaatgtaatta 172  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  40818070 aactcttctgtcgtatcactacctaactggtaaacatttgaacacatattcctttaatgtaatta 40818134  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 18203845 - 18203939
Alignment:
Q  78 tttagaaaacatggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcatttaatgtaatta 172  Q
    ||||||||||||||  |||| ||| || || ||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||    
T  18203845 tttagaaaacatggccggcataaatatagagactcttttgtcctatcactgcctaactggtaaactttttaacacatattcctttaatctaatta 18203939  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 21268051 - 21268148
Alignment:
Q  74 ctattttagaaaacatggttggcagaaacattgaaactcttttgtcgtatcactgcctaactggtaaacatttgaacacatattcatttaatgtaatta 172  Q
    |||||||||||||||||   ||||||||||||||||||||| |   | ||||||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  21268051 ctattttagaaaacatgtccggcagaaacattgaaactcttctacagcatcactgccaaactg-taaacatttgaacacatattcctttaatgtaatta 21268148  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 16679546 - 16679471
Alignment:
Q  131 taactggtaaacatttgaacacatattcatttaatgtaattannnnnnngttgcagtttatacataacagaaattt 206  Q
    |||||||||||||||||||||||||||| |||||||||||||       ||||| |||||||||||||| ||||||    
T  16679546 taactggtaaacatttgaacacatattcctttaatgtaattatttttttgttgcggtttatacataacataaattt 16679471  T

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Target: scaffold0252 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 24348 - 24449
Alignment:
Q  74 ctattttagaaaacatggttggcagaaacattgaaact---cttttgtcgtatcactgcctaactggtaaacatttgaacacatattcatttaatgtaat 170  Q
    ||||||||||||||||||  |||| ||| || ||||||   ||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||| ||||    
T  24348 ctattttagaaaacatggccggcataaatatagaaactgatcttttgtcgtatcactgcctaaccggtaaactttttaacacatattcctttaatctaat 24447  T
Q  171 ta 172  Q
    ||    
T  24448 ta 24449  T

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