View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3678_low_51 (Length: 238)
Name: NF3678_low_51
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_51 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 42306744 - 42306962
Alignment:
| Q |
1 |
gctaaggtatcaaagattgatacaagcaaagtcatggacatacataatagaaagagaaatgaacaagctacaccaaaggtaaccccatgaccagctaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42306744 |
gctaaggtatcaaagattgatacaagcaaagtcatggacatacataatagaaagagaaatgaacaagctacaccaaaggtaaccccatgaccagctaatt |
42306843 |
T |
|
| Q |
101 |
gacatttgattcctataaggaagttaggcacatccaaaattccatgtgtcaactatgatgttcacgttatgccattcataatccatgaggggattggaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42306844 |
gacatttgattcctataaggaagttaggcacatccaaaattccatgtgtcaactatgatgttcacgttatgccactcataatccatgaggggattggaag |
42306943 |
T |
|
| Q |
201 |
ctacctggccccaacccat |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42306944 |
ctacctggccccaacccat |
42306962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 74 - 219
Target Start/End: Original strand, 16935751 - 16935897
Alignment:
| Q |
74 |
caaaggtaaccccatgaccagctaattgaca-tttgattcctataaggaagttaggcacatccaaaattccatgtgtcaactatgatgttcacgttatgc |
172 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| | ||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16935751 |
caaatgtaaccccatgaccagctaattgacaatttcagtcccataaggaaattaggcacatccaaaattccatgtgtcaaccatgatgttcacgttatgc |
16935850 |
T |
|
| Q |
173 |
cattcataatccatgaggggattggaagctacctggccccaacccat |
219 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16935851 |
cactcataatccatgaggggattggaagctacctggccccaacccat |
16935897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 16935725 - 16935754
Alignment:
| Q |
1 |
gctaaggtatcaaagattgatacaagcaaa |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
16935725 |
gctaaggtatcaaagattgatacaagcaaa |
16935754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University