View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_52 (Length: 227)
Name: NF3678_low_52
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_52 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 258481 - 258261
Alignment:
| Q |
7 |
acttctaatattcaaataaatcataagatgtgaacgataataagaagaattcaaaagtttagtgtgaaacctgatatgctccaaccaaatgcacaacaag |
106 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
258481 |
acttctaatattcaaataaatcataagatgtgaatgataataagaagaattcaaaagtttagtgtgaaacctgatatgctccaaccaaatgcacaacaag |
258382 |
T |
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| Q |
107 |
gaagacattggctaaatcaacaagccaaaaaggctctttaaagccagaccccataaggatgcttcctggagtgttggaaccaaatgcagcatagccagaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
258381 |
gaagacattggctaaatcaacaagccaaaaaggctctttaaagccagaccccataaggatgcttcctggagtgttggaaccaaatgcagcatagccagaa |
258282 |
T |
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| Q |
207 |
caggcacataagaggaagata |
227 |
Q |
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||||||||||||||||||||| |
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| T |
258281 |
caggcacataagaggaagata |
258261 |
T |
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