View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_53 (Length: 224)
Name: NF3678_low_53
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 38927894 - 38927696
Alignment:
| Q |
16 |
ccaccaccatcttcattagcatcacttgagctattgaaaaattatggaagcaagttcaataagcnnnnnnncaaaagcaatgttgaaacttgtgcaagtc |
115 |
Q |
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| T |
38927894 |
ccaccaccatcttcattagcatcacttgagctattgaaaaattatggaagcaagttcaataagcaaaaaaacaaaagcaatgttgaaacttgtgcaagtc |
38927795 |
T |
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| Q |
116 |
cgcaaaagttgtcaacagaagatataataacacttgcaggaacgaagtatatccaaaactcatcacagtggcatgataataatctttacattccctatg |
214 |
Q |
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| T |
38927794 |
ctcaaaagttgtcaacagaagatataataacacttgcaggaacgaagtatatccagaactcatcacagtggcatgataataatctttacattccttatg |
38927696 |
T |
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