View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_55 (Length: 202)
Name: NF3678_low_55
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 32408395 - 32408564
Alignment:
| Q |
13 |
agcagagagaggtgtttgttcagcaggcttaagaaccatagtacaaccagcagccaaagcaggagcaaccttagcagcaaacatagtactaggaaaattc |
112 |
Q |
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| T |
32408395 |
agcagagagaggtgtttgttcagcaggcttaagaaccatagtacaaccagcagccaaagcaggagcaaccttagcagcaaacatagtactaggaaaattc |
32408494 |
T |
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| Q |
113 |
caaggaataatgtgtccaacgacaccaattggttccatcaaagtatatgcgtgcaactcccgagcaggtt |
182 |
Q |
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| T |
32408495 |
caaggaataatgtgtccaacgacaccgattggctccatcaaagtatatgcgtgcaactcccgagcaggtt |
32408564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 32433424 - 32433282
Alignment:
| Q |
17 |
gagagaggtgtttgttcagcaggcttaagaaccatagtacaaccagcagccaaagcaggagcaaccttagcagcaaacatagtactaggaaaattccaag |
116 |
Q |
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| T |
32433424 |
gagagaggtgtttgctcagcaggcttaagaaccatagtacaaccagcagccaaacaaggagcagccttagcaaagaacataatagttgggaaattccaag |
32433325 |
T |
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| Q |
117 |
gaataatgtgtccaacgacaccaattggttccatcaaagtata |
159 |
Q |
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| T |
32433324 |
gtataatgtgtccaacaacaccaataggttccatcaaagtata |
32433282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 43619200 - 43619145
Alignment:
| Q |
104 |
ggaaaattccaaggaataatgtgtccaacgacaccaattggttccatcaaagtata |
159 |
Q |
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| T |
43619200 |
ggaaagttccaaggaataatgtgtccaacaacaccaattggttccatcaatgtata |
43619145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 43626669 - 43626616
Alignment:
| Q |
13 |
agcagagagaggtgtttgttcagcaggcttaagaaccatagtacaaccagcagc |
66 |
Q |
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|||||| |||||||||||||||||||| || |||||||| || || |||||||| |
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| T |
43626669 |
agcagaaagaggtgtttgttcagcaggtttgagaaccatggtgcacccagcagc |
43626616 |
T |
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