View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_6 (Length: 564)
Name: NF3678_low_6
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 548
Target Start/End: Complemental strand, 36504688 - 36504130
Alignment:
| Q |
13 |
aatattgctcggattaggaaaaatttt-atgggcgagatgaattgagatactctccgtcactataactttatgtatataa-gacacataaatatttagtg |
110 |
Q |
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| T |
36504688 |
aatattgctcggattaggaaaattttttatgggagagatgaattgagatactctccgtcactataactttatgtatataaagacacataaatatttagtg |
36504589 |
T |
|
| Q |
111 |
ttagtcatgtgttct--------gtctatactctatacacacataaaactattttgaatggtgaagatctttacttagatgaactggcatagttgtggaa |
202 |
Q |
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| T |
36504588 |
ttagtcatgtgttctataactgtgtctatgctctatacacacataaaactattttgaatggtgaagatctttacttagatgaactggcatagttgtggaa |
36504489 |
T |
|
| Q |
203 |
aactgaaaatacaaatacaagatcaaatggtatacatattttatattttactagcatattataggcctctgcttaacatgttcttgatccatattcgtaa |
302 |
Q |
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| T |
36504488 |
aactgaaaatacaaatactagatcaaatggtatacatattttatattttactagcatattataggcctctgcttaacatattcttgatccatattcgtaa |
36504389 |
T |
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| Q |
303 |
ttagactattgacatggaaagaggcaaaatttgg-------------aaatggaacatgaatgacattaagataaatataaaaatagttccaacaaaaat |
389 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36504388 |
ttagactattgacatggaaagaggcaaaatttgttaccgctccaataaaaaggaacatgaatgacattaagataaatataaaaatagttcaaacaaaaat |
36504289 |
T |
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| Q |
390 |
ataagacaagcaagaaaatgaaaatgattaagaattcaacctaccccttcctaaactaaaaagatggtcagagtaaagtgcctttatgcatataatagca |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36504288 |
ataagacaagcaagaaaatgaaaatgattaagaattcaacctaccccttcctaaactaaaaagatggtcagagtaaagtgcctttatgcatataatagca |
36504189 |
T |
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| Q |
490 |
tctctcgaatcttgcactggtagaatattaaagtaagatatatcagaatgagcaaaacc |
548 |
Q |
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| T |
36504188 |
tctctcgaatcttgcactggtagaatattaaagtaagatatatcagaatgagcaaaacc |
36504130 |
T |
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