View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_8 (Length: 515)
Name: NF3678_low_8
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 189 - 510
Target Start/End: Original strand, 32804516 - 32804838
Alignment:
| Q |
189 |
ataagttaaaattacgataactattttacaattaaattttctagactaaagattaatatcaacaaaaattacgaaaaaa-tgaatgtgtatccaactatc |
287 |
Q |
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| T |
32804516 |
ataagttaaaattgcaataactattttacaattaaattttctagactaaagattaatatcaacaaaaattacaaaaaaaataaatgtgtatccaactatc |
32804615 |
T |
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| Q |
288 |
taacaagaacgtgtgagattaaagttatgtctaacaccaaccgacacttgtaattacatacgaacattctaacaccacaaccaaaactgcttccagaacc |
387 |
Q |
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| T |
32804616 |
taacaaggacgtatgagattaaagttatgtctaacaccaaccgacacttgtaattagatacgaacattctaacaccaccaccagcacaacttccagaacc |
32804715 |
T |
|
| Q |
388 |
tcccgaaagaactcctaaatatacaacttcgctctcacttctaggaaccatggctgctacggttcctttctctcttcttaggtacactattcactctttt |
487 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32804716 |
tccagaaagaactcctaaatatacaacttcactctcacttctaggaaccatggctgctacggttcctttctctcttcttaggtacactattcactctttt |
32804815 |
T |
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| Q |
488 |
gattcattcgtgtctgtgctgct |
510 |
Q |
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| T |
32804816 |
gattcattcgtgtgtgtgttgct |
32804838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 496
Target Start/End: Original strand, 32811799 - 32811856
Alignment:
| Q |
440 |
gctgctacggttcctttctctcttcttaggt-acactattcactcttttgattcattc |
496 |
Q |
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| T |
32811799 |
gctgctacggttcctttctctcttattaggtaacaatattcactcttttgattcattc |
32811856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 2337408 - 2337542
Alignment:
| Q |
18 |
tggatgactatgtacgtatctgtgaaagcacaacattgtcgtgctcagacaggtacgcaatgggcgcgggcacaatttttggtgatcagtacatgagaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||| |||||||| ||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
2337408 |
tggatgactatgtacgtatctgtgaaagcacaacattgccatgcttagacaggttcgcaatgggtgcgggcacaatttttggtgatcggtacatgagaag |
2337507 |
T |
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| Q |
118 |
gcaaaacaatgaagacattgcacgtatactacaaat |
153 |
Q |
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| T |
2337508 |
gccaaacaatgaagacattgca-gtatactacaaat |
2337542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 29264752 - 29264628
Alignment:
| Q |
20 |
gatgactatgtacgtatctgtgaaa--gcacaacattgtcgtgctcagacaggtacgcaatgggcgcgggcacaatttttggtgatcagtacatgagaag |
117 |
Q |
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|||||||||||||||||| |||||| |||| |||||| |||| |||||||| | |||||||| | |||| ||| |||||||||||||||||||||| |
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| T |
29264752 |
gatgactatgtacgtatcggtgaaaaagcactacattggaatgcttagacaggtttgtaatgggcgagtgcacgattgttggtgatcagtacatgagaag |
29264653 |
T |
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| Q |
118 |
gcaaaacaatgaagacattgcacgt |
142 |
Q |
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|| |||||||||||||||||||||| |
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| T |
29264652 |
gccaaacaatgaagacattgcacgt |
29264628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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