View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_9 (Length: 495)
Name: NF3678_low_9
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 384
Target Start/End: Complemental strand, 53033341 - 53032977
Alignment:
| Q |
20 |
taaaggagaataaattgaattgaatgaggtgataatgatgtgtgcatatataaaagttggacaaacctggtaaggcaataaatgcatcagcttgtcgagc |
119 |
Q |
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| T |
53033341 |
taaaggagaataaattgaattgaatgaggtgataatgatgtgtgcatatataaaagttggacaaacctggtaaggcaataaatgcatcagcttgtcgagc |
53033242 |
T |
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| Q |
120 |
catttcggctttgcgttggtgcatgtccgatacagctcttacttctcccactgtttctccagttatctaaattaaccaactaatcatacttaattaatta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53033241 |
catttcggctttgcgttggtgcatgtccgatacagctcttacttctcccactgtttctccagttatctaaattaaccaactaatcatacttaattaatta |
53033142 |
T |
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| Q |
220 |
attcaactaaaaatacacatttaatcgttgtagtagtattgtaaaatccaaatatatatactagtggtagtgattaaagtacgtacctctcttagcataa |
319 |
Q |
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| T |
53033141 |
attcaactaaaaatacacatttaatcgttgtagtagtattgtataatccaaatatatatactagtggtagtgattaaagtacgtacctctcttagcataa |
53033042 |
T |
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| Q |
320 |
gtgtctttggaatgactctacataagaaaggaggaagaatcatgaacacaaaatctatacatata |
384 |
Q |
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| T |
53033041 |
gtgtctttggaatgactctacataagaaagtaggaagaatcatgagcacaaaatgtatacatata |
53032977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 375 - 487
Target Start/End: Complemental strand, 53032960 - 53032848
Alignment:
| Q |
375 |
tatacatatagatagaagaataaggaattgaagaaaaagaaaggagggtaccctaagacgtggcgtccaccatcatagacaacttgtgagatacgaccca |
474 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53032960 |
tatatatatagatagaagaataaggaattgaagaaaaagaaaggagggtaccctaagacgtggcgtccaccatcatagacaacttgtgagatacgaccca |
53032861 |
T |
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| Q |
475 |
tcaatcctatgct |
487 |
Q |
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| T |
53032860 |
tcaatcctatgct |
53032848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 7884850 - 7884778
Alignment:
| Q |
83 |
aacctggtaaggcaataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagc |
155 |
Q |
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||||||| ||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7884850 |
aacctggcaaggcaataaaagcatcggcctgtcgagccatttcggccttgcgttggtgcatgtccgatacagc |
7884778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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