View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3679_high_2 (Length: 441)

Name: NF3679_high_2
Description: NF3679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3679_high_2
NF3679_high_2
[»] chr8 (4 HSPs)
chr8 (1-437)||(38341641-38342058)
chr8 (300-437)||(38333888-38334025)
chr8 (89-118)||(16515088-16515117)
chr8 (145-213)||(45000131-45000198)
[»] chr3 (5 HSPs)
chr3 (145-248)||(37549926-37550029)
chr3 (10-61)||(31148873-31148924)
chr3 (179-222)||(20642070-20642114)
chr3 (1-54)||(44442264-44442321)
chr3 (145-189)||(48507450-48507494)
[»] chr2 (6 HSPs)
chr2 (145-248)||(37422857-37422960)
chr2 (87-152)||(21449705-21449765)
chr2 (41-118)||(41873714-41873792)
chr2 (154-202)||(13728636-13728685)
chr2 (151-247)||(41873557-41873654)
chr2 (145-219)||(34957894-34957970)
[»] chr4 (8 HSPs)
chr4 (145-249)||(16502583-16502688)
chr4 (145-248)||(53504679-53504782)
chr4 (155-202)||(38870592-38870639)
chr4 (145-219)||(40020673-40020752)
chr4 (145-241)||(3479153-3479248)
chr4 (87-118)||(38870697-38870728)
chr4 (1-59)||(16502241-16502299)
chr4 (87-116)||(49445045-49445074)
[»] chr1 (5 HSPs)
chr1 (146-241)||(19607208-19607304)
chr1 (140-216)||(11046900-11046978)
chr1 (147-249)||(13818793-13818895)
chr1 (66-118)||(40077026-40077078)
chr1 (1-54)||(46395985-46396042)
[»] scaffold0493 (1 HSPs)
scaffold0493 (135-202)||(4167-4234)
[»] chr6 (2 HSPs)
chr6 (1-60)||(779494-779553)
chr6 (145-213)||(10525257-10525324)
[»] chr7 (2 HSPs)
chr7 (145-191)||(45249228-45249274)
chr7 (145-232)||(44208508-44208595)
[»] chr5 (8 HSPs)
chr5 (145-247)||(29465695-29465797)
chr5 (152-248)||(15047156-15047253)
chr5 (144-189)||(29075674-29075719)
chr5 (23-62)||(19176059-19176098)
chr5 (145-215)||(31673991-31674063)
chr5 (1-38)||(37910342-37910379)
chr5 (179-222)||(21524218-21524262)
chr5 (179-222)||(21534778-21534822)


Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 38342058 - 38341641
Alignment:
Q  1 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagtcagtcagttagttattcggattggtcagagagtatgtgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38342058 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgta 38341959  T
Q  101 taaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttct 200  Q
    |||||| ||||||||||| |||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341958 taaataggagaacacaaa-ggttagata------------------ttgtaaaggggaaacccttggaggagagattatctcccattctttcctatttct 38341878  T
Q  201 tagtaaaagtgttctttctattccattcaattgttgggttcttaacaatacatcattttatttgcaatctttctcagaatgctaacgggagnnnnnnncc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  38341877 tagtaaaagtgttctttctattccattcaattgttgggttcttaacaatacatcattttatttgcaatctttctcagaatgctaacgggagaaaaaaacc 38341778  T
Q  301 tctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341777 tctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaaa 38341678  T
Q  401 aacccatttaacaaggctgttgaggttgatgatgtcc 437  Q
    |||||||||||||||||||||||||||||||||||||    
T  38341677 aacccatttaacaaggctgttgaggttgatgatgtcc 38341641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 300 - 437
Target Start/End: Complemental strand, 38334025 - 38333888
Alignment:
Q  300 ctctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaa 399  Q
    |||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||| |||||||| | || ||||||||||||| | || |||   ||||    
T  38334025 ctctaaagaagcataaaatatcttctattgctggtgtggaggataaaggtggtaaatcctcaaggaaaccaagaaaacaagcagctagtaaacctactaa 38333926  T
Q  400 aaacccatttaacaaggctgttgaggttgatgatgtcc 437  Q
    |||| |||| ||  |||||||| | | |||||||||||    
T  38333925 aaactcattgaatgaggctgttaacggtgatgatgtcc 38333888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 16515088 - 16515117
Alignment:
Q  89 agagtatgtgtataaataagagaacacaaa 118  Q
    ||||||||||||||||||||||||||||||    
T  16515088 agagtatgtgtataaataagagaacacaaa 16515117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 45000198 - 45000131
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 213  Q
    |||||| ||||||||||||||| |||||| ||| |||||  |||| |||||||||||| ||||| ||||    
T  45000198 tattgtgaaggggaaacccttg-aggagatattctctcctgttctatcctatttcttaataaaattgtt 45000131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 37549926 - 37550029
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 244  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||| || |||||||||   ||||||||||||||||||||||| ||| |||||||| ||    
T  37549926 tattgtgaaggggaaactcttggaggagagattatctcctattctatcatatttcttaaataaagtgttctttctattccattccattcttgggttccta 37550025  T
Q  245 acaa 248  Q
    ||||    
T  37550026 acaa 37550029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 31148924 - 31148873
Alignment:
Q  10 atagaataatggctaattagagtagttaatctagttaagagttgttatagtc 61  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||| ||||    
T  31148924 atagaatagtggttaattagagtagttaaagtagttaagagttgttacagtc 31148873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 20642114 - 20642070
Alignment:
Q  179 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 222  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||    
T  20642114 tctcccattctttcctattttcttaataaaagttttctttctatt 20642070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 44442321 - 44442264
Alignment:
Q  1 tgttgggatatagaataatggctaatta----gagtagttaatctagttaagagttgt 54  Q
    |||| |||||||||||||||||||||||    || |||||||| ||||||||||||||    
T  44442321 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 44442264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 48507450 - 48507494
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagagattatctcccattct 189  Q
    |||||| || ||||||||||||||||||||||| ||||| |||||    
T  48507450 tattgtgaaagggaaacccttggaggagagattctctcctattct 48507494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 248
Target Start/End: Complemental strand, 37422960 - 37422857
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 244  Q
    |||||| |||| ||||||||||||||||||||| ||||| ||||| |||||||||||  |||||||||||||||| |   |||||||| |||||||| ||    
T  37422960 tattgtgaaggtgaaacccttggaggagagattctctcctattctatcctatttcttcataaaagtgttctttctttggaattcaatttttgggttccta 37422861  T
Q  245 acaa 248  Q
    ||||    
T  37422860 acaa 37422857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 21449765 - 21449705
Alignment:
Q  87 agagagtatgtgtataaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaa 152  Q
    |||||||||||||||||||| ||||||| |||| ||    ||||||||||||||||||||||||||    
T  21449765 agagagtatgtgtataaataggagaaca-aaaatgt----taaagagtatcttttgaatattgtaa 21449705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 41873792 - 41873714
Alignment:
Q  41 tagttaagagttgttatagtcagtcagttagttattcggattggtcagagagtatgtgtataaa-taagagaacacaaa 118  Q
    ||||||||||||| |||||| ||| |   ||||||| ||||| || |||||||||||||||||| || |||||||||||    
T  41873792 tagttaagagttgctatagttagttacaaagttatttggattagttagagagtatgtgtataaattaggagaacacaaa 41873714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 13728636 - 13728685
Alignment:
Q  154 ggggaaacccttggaggagaga-ttatctcccattctttcctatttctta 202  Q
    |||||||||||||||||||| | || ||||| ||||||||||||||||||    
T  13728636 ggggaaacccttggaggagatatttctctcctattctttcctatttctta 13728685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 41873654 - 41873557
Alignment:
Q  151 aaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctattccattcaattgttgggttcttaaca 247  Q
    ||||||||||| |||||||||||||||||||||   |||||| || ||||||| |  |   |||||||||||||||||||  | |||||||| |||||    
T  41873654 aaaggggaaactcttggaggagagattatctcctggtctttcttattttcttaatttagtggttctttctattccattcagctcttgggttcctaaca 41873557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 34957970 - 34957894
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttc-ttagtaaaagtgttctttct 219  Q
    |||||| |||| | ||||||||||||||||| || ||||| ||| ||||||||||| ||| ||||||||||| ||||    
T  34957970 tattgtgaaggtgtaacccttggaggagagatttctctcctattatttcctatttctttattaaaagtgttcgttct 34957894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 16502583 - 16502688
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctt 243  Q
    |||||| |||||||||||||||||||||||| || ||||| ||||| || ||||||||| || ||||||||||||||    || ||||| |||||||| |    
T  16502583 tattgtgaaggggaaacccttggaggagagatttctctcctattctatcatatttcttaatataagtgttctttctaaagaatccaattcttgggttcct 16502682  T
Q  244 aacaat 249  Q
    ||||||    
T  16502683 aacaat 16502688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 53504679 - 53504782
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 244  Q
    |||||| ||||||||||||||||||||| |||| || ||  |||| || |||||||||    ||||||| |||||||||||||||||| || ||||| ||    
T  53504679 tattgtgaaggggaaacccttggaggagtgattctcccctgttctatcatatttcttaaattaagtgttttttctattccattcaattatttggttccta 53504778  T
Q  245 acaa 248  Q
    ||||    
T  53504779 acaa 53504782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 38870639 - 38870592
Alignment:
Q  155 gggaaacccttggaggagagattatctcccattctttcctatttctta 202  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  38870639 gggaaacccttgcaggagagattatctcccactctatcctatttctta 38870592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 40020752 - 40020673
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagagatt-atctccc-attctttcctattt---cttagtaaaagtgttctttct 219  Q
    |||||| |||||||| |||||| |||||||||| ||||||| ||||||||||||||   |||| ||||||||||||||||    
T  40020752 tattgtgaaggggaatcccttgaaggagagatttatctccctattctttcctattttttcttaataaaagtgttctttct 40020673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 3479248 - 3479153
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttc 241  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||  || |||||||||   |||||||||||||| ||  |||||||| ||||||||    
T  3479248 tattgtcaaggggaaacccttg-aggagagattctctcttattccatcatatttcttaaataaagtgttctttcttttgaattcaattcttgggttc 3479153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 118
Target Start/End: Complemental strand, 38870728 - 38870697
Alignment:
Q  87 agagagtatgtgtataaataagagaacacaaa 118  Q
    ||||||||||||||||||||||||||||||||    
T  38870728 agagagtatgtgtataaataagagaacacaaa 38870697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16502241 - 16502299
Alignment:
Q  1 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatag 59  Q
    |||| |||||||  |||||||| |||||| ||||||||  |||||||||||||||||||    
T  16502241 tgttaggatatattataatggccaattagtgtagttaaagtagttaagagttgttatag 16502299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 49445074 - 49445045
Alignment:
Q  87 agagagtatgtgtataaataagagaacaca 116  Q
    ||||||||||||||||||||||||||||||    
T  49445074 agagagtatgtgtataaataagagaacaca 49445045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 19607304 - 19607208
Alignment:
Q  146 attgtaaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctattccattcaattgttgggttc 241  Q
    ||||| |||||||||||||||||||||||||| ||||| | |||||| || ||||||| | ||| |||||||| |||||||| |||||  |||||||    
T  19607304 attgtgaaggggaaacccttggaggagagattctctcctactctttcttattttcttaattaaattgttctttatattccatccaattactgggttc 19607208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 11046900 - 11046978
Alignment:
Q  140 ttgaatattgtaaaggggaaacccttggaggagaga-ttatctcccattctttccta-tttcttagtaaaagtgttctt 216  Q
    ||||| ||||| |||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |||||| ||||||    
T  11046900 ttgaacattgtgaaggggaaacccttggagtagagatttatctcctattctttcctattttcttaataaaagagttctt 11046978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 13818895 - 13818793
Alignment:
Q  147 ttgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaac 246  Q
    |||| ||||||||||||||| |||||||||| ||||||||| | || ||||||||  | ||||| |||||||| |   |||||||| ||||| || ||||    
T  13818895 ttgtgaaggggaaacccttgaaggagagattctctcccattttatcatatttcttcatgaaagttttctttctttcgaattcaattcttgggctcctaac 13818796  T
Q  247 aat 249  Q
    |||    
T  13818795 aat 13818793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 40077026 - 40077078
Alignment:
Q  66 agttagttattcggattggtcagagagtatgtgtataaataagagaacacaaa 118  Q
    |||| |||||| ||||| || |||||||||||| ||||||| |||||||||||    
T  40077026 agtttgttatttggattagttagagagtatgtgcataaataggagaacacaaa 40077078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 46395985 - 46396042
Alignment:
Q  1 tgttgggatatagaataatggc----taattagagtagttaatctagttaagagttgt 54  Q
    |||| |||||||||||||||||    |||||||| |||||||| ||||||||||||||    
T  46395985 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 46396042  T

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Target: scaffold0493 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 4234 - 4167
Alignment:
Q  135 atcttttgaatattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttctta 202  Q
    |||||||||||||||| || |||||||||||| |||||||||| || || ||||| || |||||||||    
T  4234 atcttttgaatattgtgaatgggaaacccttgaaggagagattctcccctattctatcatatttctta 4167  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 779494 - 779553
Alignment:
Q  1 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagt 60  Q
    |||| |||||| ||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  779494 tgttaggatatggaataatggctaaatagagtagttaatgtagttaagagctgctatagt 779553  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 10525324 - 10525257
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 213  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||| ||| |||||||| ||||| ||||    
T  10525324 tattgtgaaggggaaacccttg-aggagagattttctcgtattctatccaatttcttaataaaattgtt 10525257  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 45249274 - 45249228
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagagattatctcccattcttt 191  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||    
T  45249274 tattgtgaaggggaaacccttggaggatagattttctcccattcttt 45249228  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 44208595 - 44208508
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaatt 232  Q
    |||||| |||||||||| ||||||||| ||||| ||||  ||||| || | |||||||   ||||| ||||||||||| |||||||||    
T  44208595 tattgtgaaggggaaactcttggaggaaagattctctcttattctatcgtgtttcttaaataaagtattctttctatttcattcaatt 44208508  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 29465695 - 29465797
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 244  Q
    |||||| ||||||||||  |||||||||||||| |||     ||| || |||||||||   ||||||||||||||||||||||||||| |||| ||| ||    
T  29465695 tattgtgaaggggaaacggttggaggagagattctcttttcgtctatcatatttcttaaataaagtgttctttctattccattcaattcttggattccta 29465794  T
Q  245 aca 247  Q
    |||    
T  29465795 aca 29465797  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 15047156 - 15047253
Alignment:
Q  152 aaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaa 248  Q
    |||||||||||||||||||||||| || ||||| ||||||| ||| || | | |||||||||||||||| |   || ||||| |||||||| ||||||    
T  15047156 aaggggaaacccttggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggttcctaacaa 15047253  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 29075674 - 29075719
Alignment:
Q  144 atattgtaaaggggaaacccttggaggagagattatctcccattct 189  Q
    ||||||| ||||||||| |||||||||||||||||||||| |||||    
T  29075674 atattgtgaaggggaaaaccttggaggagagattatctccaattct 29075719  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 19176059 - 19176098
Alignment:
Q  23 taattagagtagttaatctagttaagagttgttatagtca 62  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  19176059 taattagagtagttaaagtagttaagagttgttatagtca 19176098  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 31673991 - 31674063
Alignment:
Q  145 tattgtaaaggggaaacccttggaggagagattatctcccat--tctttcctatttcttagtaaaagtgttct 215  Q
    |||||| |||||||| ||||||||||||||||| ||||| ||  | | |||||||| ||| ||||||||||||    
T  31673991 tattgtgaaggggaaccccttggaggagagattctctcctattatatatcctattttttaataaaagtgttct 31674063  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37910379 - 37910342
Alignment:
Q  1 tgttgggatatagaataatggctaattagagtagttaa 38  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  37910379 tgttgggatgtagaataatgactaattagagtagttaa 37910342  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 21524218 - 21524262
Alignment:
Q  179 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 222  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  21524218 tctcccattctttcctattttcttaataaatgtgttctttctatt 21524262  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 21534778 - 21534822
Alignment:
Q  179 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 222  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  21534778 tctcccattctttcctattttcttaataaatgtgttctttctatt 21534822  T

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