View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3679_high_6 (Length: 410)
Name: NF3679_high_6
Description: NF3679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3679_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 47332952 - 47333349
Alignment:
| Q |
1 |
ctcttcctgctgcatatgatgatggttggttttctctcaaatggatcacttctcattccatcaacaacatcaataacgctgaaccatagttaatcaaata |
100 |
Q |
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| T |
47332952 |
ctcttcctgctgcatatgatgatggttggttttctctcaaatggatcacttctcattccatcaacaacatcaataacgctgaaccatggttaatcaaata |
47333051 |
T |
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| Q |
101 |
cggtgattttgaccgtttttacattggtggtgatacttcaggtgcaaatattgcacataatgcacttcttcgtgttggtaatggtgttgaaactttacct |
200 |
Q |
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| T |
47333052 |
cggtgattttgaccgtttttacattggtggtgatacttcaggtgcaaatattgcacataatgcacttcttcgtgttggtaatggtgttgaaactttacct |
47333151 |
T |
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| Q |
201 |
ggtgatgtgaaaattagaggagcattacttgcttttcctttgttttggagttcgaagccgattttgtcagaatcagttgaagggcatgaacaaagttcac |
300 |
Q |
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| T |
47333152 |
ggtgatgtgaaaattagaggagcattacttgcttttcctttgttttggagttcgaagccggttttgtcagaatcagttgaagggcatgaacaaagttcac |
47333251 |
T |
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| Q |
301 |
ctatgaaagtttggaattttgtgtatcctgatgcacctggtgggattgataaccctttgatcaatcctttggctattgatgctccaagtttggatatt |
398 |
Q |
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| T |
47333252 |
ctatgaaagtatggaattttgtgtatcctgatgcacctggtgggattgataaccctttgatcaatcctttggctattgatgctccaagtttggatatt |
47333349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 47301704 - 47301763
Alignment:
| Q |
309 |
gtttggaattttgtgtatcctgatgcacctggtgggattgataaccctttgatcaatcct |
368 |
Q |
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| T |
47301704 |
gtttggaattttgtgtatccttcagcacccggtgggattgataatcctatgattaatcct |
47301763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 17841841 - 17841900
Alignment:
| Q |
309 |
gtttggaattttgtgtatcctgatgcacctggtgggattgataaccctttgatcaatcct |
368 |
Q |
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| T |
17841841 |
gtttggaattttgtgtatccttcagcaccttgtgggattgataatcctatgattaatcct |
17841900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 393
Target Start/End: Complemental strand, 653632 - 653540
Alignment:
| Q |
301 |
ctatgaaagtttggaattttgtgtatcctgatgcacctggtgggattgataaccctttgatcaatcctttggctattgatgctccaagtttgg |
393 |
Q |
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| T |
653632 |
ctattaaagtgtggaactttgtgtaccctaatgcaaagggtgggattgataaccctatggttaatccttgtgctattggtgcacctagtttgg |
653540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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