View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3679_high_7 (Length: 372)
Name: NF3679_high_7
Description: NF3679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3679_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 27357122 - 27357345
Alignment:
| Q |
19 |
gattgatggaattatatcatttaatctatagattgtacttgtattttttgtatcaaagtgttgaatttcatccactagaaattgcagccactagaaattg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27357122 |
gattgatggaattatatcatttaatctatagattgtacttgtattttttgtatcaaagtgttgaatttcatccattagaaattgcagccactagaaattg |
27357221 |
T |
|
| Q |
119 |
cagccacaagcactgtc-taatgcagaaactac--tggcttaacaagcaaaagtctaatgaaaccttcatttaaaaaatatgactaaaaattaggctttt |
215 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27357222 |
ctgccacaagcactgtcttaatgcagaaactactgtggcttaacaagcaaaaatctaatgaaaccttcatttaaaaaatatggctaaaaattaggctttt |
27357321 |
T |
|
| Q |
216 |
tgcatgtcatctcaaggatgcaaa |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
27357322 |
tgcatgtcatctcaaggatgcaaa |
27357345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 248 - 360
Target Start/End: Original strand, 27357397 - 27357509
Alignment:
| Q |
248 |
taatttaatatactgtcaattggaaaaacaagaaaaactcctcaaagtcggtctgtactgtgcttctgcttccttatgcacatttaattcaagtttaaac |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27357397 |
taatttaatatactgtcaattggaaaaacaagaaaaactcctcaaagtcggtctgtactgtgcttctgcttccttatgcacatttaattcaagtttaaac |
27357496 |
T |
|
| Q |
348 |
atatatattcctt |
360 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27357497 |
atatatattcctt |
27357509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University