View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3679_low_1 (Length: 445)
Name: NF3679_low_1
Description: NF3679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3679_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 52249935 - 52250160
Alignment:
| Q |
14 |
tacttcaggttcaaagtggcattcactatgaataatctcttaatagcaggaaatttgaactccgattctctacgcctggtagaggaaaatagttgttcaa |
113 |
Q |
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| T |
52249935 |
tacttcaggttcaaagtgccattcactatgaataatctcttaatagcaggaaatttgaactccgattctctatgcctggtagaggaaaatagttgttcaa |
52250034 |
T |
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| Q |
114 |
tactccattccccatgatgtacaaatttatgccaacaatcataacagtgtttcaaactagtaagtgcagtttttaaatggaatagacaagaatttcaaga |
213 |
Q |
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| T |
52250035 |
tactccattccccatgatgtacaaatttatgccaacaatcataacagtgtttcaaactagtaagtgcagtttttaaatggaatagacaagaatttcaaga |
52250134 |
T |
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| Q |
214 |
aagtgtccctaacccctgccctgtcc |
239 |
Q |
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| T |
52250135 |
aagggtccctaacccctgccctgtcc |
52250160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 283 - 429
Target Start/End: Original strand, 52250204 - 52250350
Alignment:
| Q |
283 |
cacatgtgtaatcttgatagggaactagtgagctagagtttcaacggtcaagggtcaaacactatgggacacaacaaaacaacatggattggtgtttgtt |
382 |
Q |
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| T |
52250204 |
cacatgtgtaatcttgatagggaactagtgagctagagtttcaagggtcaagggtcaaacactatgggacacaacaaaacaacatggattggtgtttgtt |
52250303 |
T |
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| Q |
383 |
tgtttgttacatctacttcaaaccaaacatacctcagtacttgtttt |
429 |
Q |
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| T |
52250304 |
tgtttgttacatctacttcaaaccaaacataccttagtacttgtttt |
52250350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 41120418 - 41120499
Alignment:
| Q |
60 |
caggaaatttgaactccgattctctacgcctggtagaggaaaatagttgttcaatactccattccccatgatgtacaaattt |
141 |
Q |
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| T |
41120418 |
caggaaattttaactctgattctctctggttggtagagaataataggtgttcaatactccatacccgacgatgtacatattt |
41120499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 41126837 - 41126902
Alignment:
| Q |
60 |
caggaaatttgaactccgattctctacgcctggtagaggaaaatagttgttcaatactccattccc |
125 |
Q |
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| T |
41126837 |
caggaaattttaactctgattctctctggttggtagagaataataggtgttcaatactccattccc |
41126902 |
T |
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