View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3679_low_10 (Length: 269)

Name: NF3679_low_10
Description: NF3679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3679_low_10
NF3679_low_10
[»] chr6 (2 HSPs)
chr6 (19-209)||(33597379-33597565)
chr6 (240-269)||(31517100-31517129)
[»] chr8 (2 HSPs)
chr8 (219-269)||(426223-426270)
chr8 (240-269)||(3989027-3989056)
[»] chr2 (2 HSPs)
chr2 (219-269)||(37085120-37085170)
chr2 (240-269)||(42251840-42251869)
[»] chr4 (2 HSPs)
chr4 (220-268)||(28203513-28203562)
chr4 (221-269)||(49195005-49195050)
[»] chr5 (1 HSPs)
chr5 (240-269)||(19376052-19376081)
[»] chr3 (1 HSPs)
chr3 (240-269)||(35272149-35272178)
[»] scaffold0054 (1 HSPs)
scaffold0054 (219-269)||(31502-31549)
[»] chr1 (1 HSPs)
chr1 (219-265)||(16836016-16836059)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 33597379 - 33597565
Alignment:
Q  19 ataggacgctttcaaaaggtcatttaagattgtgaatattttaaaaggaacttgtaagacattactcatatcagcttgaatcaaacatttacatttgaat 118  Q
    ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33597379 ataggacgcttacaaaaggtcttttaagattgtaaatattttaaaaggaacttgtaagacattactcatatcagcttgaatcaaacatttacatttgaat 33597478  T
Q  119 tgataagttggtcattatgtttcaaaacttaatatcaaataggtatttatatttaattatttactatcaacttattctttaacatatactc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    ||| ||||||||||||||||    
T  33597479 tgataagttggtcattatgtttcaaaacttaatatcaaataggtatttatatttaattatttgctat----ttaatctttaacatatactc 33597565  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 240 - 269
Target Start/End: Original strand, 31517100 - 31517129
Alignment:
Q  240 aacttatgtgacaacttcttttttctctct 269  Q
    ||||||||||||||||||||||||||||||    
T  31517100 aacttatgtgacaacttcttttttctctct 31517129  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 426270 - 426223
Alignment:
Q  219 gagtagtgatatttgaacaataacttatgtgacaacttcttttttctctct 269  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  426270 gagtagtgatatttgaacaa---cttatgtgacaacttcttttttctctct 426223  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 240 - 269
Target Start/End: Complemental strand, 3989056 - 3989027
Alignment:
Q  240 aacttatgtgacaacttcttttttctctct 269  Q
    ||||||||||||||||||||||||||||||    
T  3989056 aacttatgtgacaacttcttttttctctct 3989027  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 37085120 - 37085170
Alignment:
Q  219 gagtagtgatatttgaacaataacttatgtgacaacttcttttttctctct 269  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||||||    
T  37085120 gagtagtgatatttgaacaactatatatgtgacaacttcttttttctctct 37085170  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 240 - 269
Target Start/End: Original strand, 42251840 - 42251869
Alignment:
Q  240 aacttatgtgacaacttcttttttctctct 269  Q
    ||||||||||||||||||||||||||||||    
T  42251840 aacttatgtgacaacttcttttttctctct 42251869  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 28203562 - 28203513
Alignment:
Q  220 agtagtgatatttgaacaat-aacttatgtgacaacttcttttttctctc 268  Q
    |||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  28203562 agtagtgatatttgaacaaccaacttatttgacaacttcttttttctctc 28203513  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 49195050 - 49195005
Alignment:
Q  221 gtagtgatatttgaacaataacttatgtgacaacttcttttttctctct 269  Q
    ||||||||||||||||||   |||||||||||||||||||| |||||||    
T  49195050 gtagtgatatttgaacaa---cttatgtgacaacttcttttctctctct 49195005  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 240 - 269
Target Start/End: Original strand, 19376052 - 19376081
Alignment:
Q  240 aacttatgtgacaacttcttttttctctct 269  Q
    ||||||||||||||||||||||||||||||    
T  19376052 aacttatgtgacaacttcttttttctctct 19376081  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 240 - 269
Target Start/End: Complemental strand, 35272178 - 35272149
Alignment:
Q  240 aacttatgtgacaacttcttttttctctct 269  Q
    ||||||||||||||||||||||||||||||    
T  35272178 aacttatgtgacaacttcttttttctctct 35272149  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 31502 - 31549
Alignment:
Q  219 gagtagtgatatttgaacaataacttatgtgacaacttcttttttctctct 269  Q
    |||||||||||||||||||||   || ||||||||||| ||||||||||||    
T  31502 gagtagtgatatttgaacaat---ttttgtgacaactttttttttctctct 31549  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 16836016 - 16836059
Alignment:
Q  219 gagtagtgatatttgaacaataacttatgtgacaacttcttttttct 265  Q
    ||||||||||||||||||||   ||| ||||||||||||||||||||    
T  16836016 gagtagtgatatttgaacaa---cttttgtgacaacttcttttttct 16836059  T

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