View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3679_low_13 (Length: 232)
Name: NF3679_low_13
Description: NF3679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3679_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 2136605 - 2136401
Alignment:
| Q |
9 |
gacatcatcataaatacacaataacacatctctataaatgttcaccatttcttctcactcaccccctcttctgtttaagaaacagccttgagagaaacag |
108 |
Q |
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| T |
2136605 |
gacatcatcataaatacacaataacacatctctataaatgttcaccatttcttctcactcaccccctcttctgtttaagaaacagccttgagagaaacag |
2136506 |
T |
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| Q |
109 |
aatcaaatcctttccttaaccttcacgccttcatttaaaaaggttcaaccttttaaccaatctctgaactctttctttgacccttttttcacttcaccat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2136505 |
aatcaaatcctttccttaaccttcacgccttcatttaaaaaggttcaaccttttaaccaatctctgaactctttctttgacccttttttcacttca-cat |
2136407 |
T |
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| Q |
209 |
taaact |
214 |
Q |
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|||||| |
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| T |
2136406 |
taaact |
2136401 |
T |
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