View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3679_low_14 (Length: 231)
Name: NF3679_low_14
Description: NF3679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3679_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 34901337 - 34901561
Alignment:
| Q |
6 |
agtaactgtatgccaattaacatggtttcaagtccttgatacctcgtcaccgccccaaagaaaagcttctagctattttgtcaagctggttacacacatt |
105 |
Q |
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| T |
34901337 |
agtaactgtatgccaattaacatggtttcaagtccttgataccccgtcaccgccccaaagaaa-gcttctagctattttgtcaagctggttacacacatt |
34901435 |
T |
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| Q |
106 |
agtaggaatatgacgagttgctttgtatatactaggatagttgtggtaacatatttcaccaaacaagccctaccagctttatttaacgagttacccttct |
205 |
Q |
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| T |
34901436 |
agtaggaatatgacgagttgcattgtatatactaggatagttgtggtaacatatttctccaaacaagccctaccagctttatttaacgagttacccttct |
34901535 |
T |
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| Q |
206 |
aagactaatttcttttgaactttatc |
231 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34901536 |
aagactaatttcttttgaactttatc |
34901561 |
T |
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