View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3679_low_16 (Length: 204)
Name: NF3679_low_16
Description: NF3679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3679_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 30802985 - 30802805
Alignment:
| Q |
18 |
gatggtgcagcaacatcagattcattcgtcacacgttgagcattcttccgtcgaactcgttttctttgcttgacagatgaatcagtaggaggtg---tta |
114 |
Q |
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| T |
30802985 |
gatggtgcagcaacatcagattcattcgtcacaccttgagcattcttccgtcgaactcgttttctttgcttgacagatgaatcagtaggaggtgtactta |
30802886 |
T |
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| Q |
115 |
tgatcacaacgatgaattgtttgttggattcatcataaaccaatttgtatgagtcttcgttgtcaccaacattgatgatgt |
195 |
Q |
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| T |
30802885 |
tgatcacaacgatgaattgtttgttggattcatcataaaccaatttgtatgagtcttcgttgtcaccaacattgatgatgt |
30802805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 30782482 - 30782309
Alignment:
| Q |
18 |
gatggtgcagcaacatcagattcattcgtcacacgttgagcattcttccgtcgaactcgttttctttgcttgacagatgaatcagtaggaggtgttatga |
117 |
Q |
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| T |
30782482 |
gatggtgcagcaacatcatattcatccgtcacacgttgaacattctttcatcggactcgtttcctctccttgacagatgaatcagtaggaggggttatga |
30782383 |
T |
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| Q |
118 |
tcacaacgatgaattgtttgttggattcatcataaaccaatttgtatgagtcttcgttgtcaccaacattgatg |
191 |
Q |
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| T |
30782382 |
tcacaatgttgacttggttgttagattcatcagtgaccaatttgtatgagtctttgttgtcaccaacattgatg |
30782309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 30781195 - 30781339
Alignment:
| Q |
45 |
gtcacacgttgagcattcttccgtcgaactcgttttctttgcttgacagatgaatcagtaggaggtgttatgatcacaacgatgaatt-gtttgttggat |
143 |
Q |
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| T |
30781195 |
gtcacacgtcgaaccttctttggtcggacttgtttcctctgcttgacagatgaataaagagaaggggttataatcgcaacgatgactttggttgttagat |
30781294 |
T |
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| Q |
144 |
tcatcataaaccaatttgtatgagtcttcgttgtcaccaacattg |
188 |
Q |
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| T |
30781295 |
tcatcaataaccaatttgtatgagtctttgttgtcaccatcattg |
30781339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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