View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3679_low_3 (Length: 433)

Name: NF3679_low_3
Description: NF3679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3679_low_3
NF3679_low_3
[»] chr4 (9 HSPs)
chr4 (11-433)||(52249454-52249875)
chr4 (146-426)||(41120031-41120309)
chr4 (58-130)||(2588507-2588579)
chr4 (58-133)||(16497926-16498001)
chr4 (57-130)||(5650774-5650847)
chr4 (28-116)||(39599135-39599223)
chr4 (81-133)||(28075448-28075500)
chr4 (366-426)||(41126668-41126728)
chr4 (81-133)||(11156548-11156600)
[»] chr7 (4 HSPs)
chr7 (58-132)||(12859261-12859335)
chr7 (57-132)||(36167746-36167821)
chr7 (57-133)||(19886571-19886647)
chr7 (57-133)||(32775170-32775246)
[»] chr3 (5 HSPs)
chr3 (28-132)||(9454604-9454708)
chr3 (57-132)||(53208700-53208775)
chr3 (59-133)||(7322854-7322928)
chr3 (57-128)||(32130160-32130231)
chr3 (96-133)||(1915483-1915520)
[»] chr5 (5 HSPs)
chr5 (57-132)||(7992423-7992498)
chr5 (57-133)||(32325826-32325902)
chr5 (57-132)||(12904995-12905070)
chr5 (81-133)||(34641930-34641982)
chr5 (96-133)||(28827502-28827539)
[»] chr8 (8 HSPs)
chr8 (57-131)||(34784534-34784608)
chr8 (57-128)||(3117707-3117778)
chr8 (32-113)||(29168536-29168617)
chr8 (57-133)||(20900773-20900849)
chr8 (57-130)||(1548139-1548212)
chr8 (59-132)||(3277518-3277591)
chr8 (57-132)||(23033396-23033471)
chr8 (96-133)||(15657346-15657383)
[»] chr2 (7 HSPs)
chr2 (57-130)||(44673172-44673245)
chr2 (60-132)||(25438287-25438359)
chr2 (81-132)||(21006375-21006426)
chr2 (81-133)||(6536544-6536596)
chr2 (81-132)||(24132211-24132262)
chr2 (79-128)||(37154923-37154972)
chr2 (96-133)||(39574644-39574681)
[»] chr6 (1 HSPs)
chr6 (57-132)||(13425691-13425766)
[»] chr1 (2 HSPs)
chr1 (81-133)||(23963006-23963058)
chr1 (28-86)||(47523697-47523755)
[»] scaffold0003 (1 HSPs)
scaffold0003 (89-133)||(247184-247228)


Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Original strand, 52249454 - 52249875
Alignment:
Q  11 cagagaaccaagcaataaaacagagtaaatccgaaccagagtgaagtcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  52249454 cagagaaccaagcaataaaacagagtaaatccgaaccagagtgaagtcgaagcacggtagaggtgctgtggcacgtaagatcgtgcgatcctacgtactg 52249553  T
Q  111 ggactcattcctgactaccttggatggaactcctgcatacattgctcctgagattttattacaaaaggagtacaacggaaagttatctcgggttttatca 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  52249554 ggactcattcctgactaccttggatggaactcctgcatacattgctccagaggttttattacgaaaggagtacaacggaaagttatctcgggttttatca 52249653  T
Q  211 atcattttcttaaaaaccacgtttcaaaccactttttatggctattaacgaccatcgtttaacaattgacaaatataataatacagtatcatatcgatta 310  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52249654 atcattttcttaaaaaccacgtttcaaatcactttttatggctattaacgaccatcgtttaacaattgacaaatataataatacagtatcatatcgatta 52249753  T
Q  311 aaaagttcaccgtttagnnnnnnnttgtcgattcagttagtgtttttgactatttttgtatagattgcagatgtgtggtcctacggtgtgacactttatg 410  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  52249754 aaaagttcaccgtttag-taaaaattgtcgattcagttagtgtttttgactatttttgtatagattgcagatgtgtgttcctatggtgtgacactttatg 52249852  T
Q  411 gcatgctagttggtgctcatcca 433  Q
    |||||||||||||||| ||||||    
T  52249853 gcatgctagttggtgcacatcca 52249875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 146 - 426
Target Start/End: Original strand, 41120031 - 41120309
Alignment:
Q  146 catacattgctcctgagattttattacaaaaggagtacaacggaaagttatctcgggttttatcaatcattttc--ttaaaaaccacgtttcaaaccact 243  Q
    |||||||| |||||||| || | ||||||||||||||| || ||||| |  ||  | |||| || |||||||||  |||||||| ||||||||||| |||    
T  41120031 catacattactcctgaggttctgttacaaaaggagtacgacagaaaggtgcctgagattttctctatcattttcgattaaaaactacgtttcaaactact 41120130  T
Q  244 ttttatggctattaacgaccatcgtttaacaattgacaaata-taataatacagtatcatatcgattaaaaagttcaccgtttagnnnnnnnttgtcgat 342  Q
    | |||||||| | ||| ||||| ||||||||||||||||||| ||||| |||||| || ||| ||||||||||||||| ||||||        |||||||    
T  41120131 tcttatggct-taaacaaccatggtttaacaattgacaaatagtaatagtacagtctcgtattgattaaaaagttcacggtttagtaaaaaa-tgtcgat 41120228  T
Q  343 tcagttagtgtttttgactatttttgtatagattgcagatgtgtggtcctacggtgtgacactttatggcatgctagttggtgc 426  Q
    |||||||||||||||| |   | |||| |||||||||||| |||||||||  ||||||||||||||||  ||||||||||||||    
T  41120229 tcagttagtgtttttggc---tcttgtgtagattgcagatatgtggtcctgtggtgtgacactttatgttatgctagttggtgc 41120309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 2588507 - 2588579
Alignment:
Q  58 cgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactacct 130  Q
    ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2588507 cgaagtacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 2588579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 16497926 - 16498001
Alignment:
Q  58 cgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    ||||||||||| |||||||| |||||| || |||||||||||||||||||||||||||| ||| ||||||||||||    
T  16497926 cgaagcacggtcgaggtgctgtggcacatacgatcgtgcgatcctacgtgctgggactcgttcttgactaccttgg 16498001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 5650774 - 5650847
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactacct 130  Q
    |||||||||||| |||||||| |||||||| |||| ||||||||||||||||| |||||| |||||||||||||    
T  5650774 tcgaagcacggtcgaggtgctgtggcacgtgagattgtgcgatcctacgtgcttggactcgttcctgactacct 5650847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 39599135 - 39599223
Alignment:
Q  28 aaacagagtaaatccgaaccagagtgaagtcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactc 116  Q
    |||||||| ||| |||||||||||| ||||||||||||  | |||||| | ||| ||||||||||||| ||||||||| ||||||||||    
T  39599135 aaacagagcaaaaccgaaccagagtaaagtcgaagcacaattgaggtgttgtggaacgtaagatcgtgtgatcctacgagctgggactc 39599223  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 28075500 - 28075448
Alignment:
Q  81 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    ||||||||||||||||||||||||  ||||||||||  ||||| |||||||||    
T  28075500 gcacgtaagatcgtgcgatcctacaagctgggactcgatcctggctaccttgg 28075448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 366 - 426
Target Start/End: Original strand, 41126668 - 41126728
Alignment:
Q  366 ttgtatagattgcagatgtgtggtcctacggtgtgacactttatggcatgctagttggtgc 426  Q
    |||| |||||||||||||| ||||| |  ||||||||||| |||| |||||||||||||||    
T  41126668 ttgtgtagattgcagatgtttggtcttgtggtgtgacactctatgtcatgctagttggtgc 41126728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 11156600 - 11156548
Alignment:
Q  81 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    |||| ||||||| |||||||||||||||||| ||||  ||||| |||||||||    
T  11156600 gcacataagatcatgcgatcctacgtgctggaactcgatcctggctaccttgg 11156548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 12859261 - 12859335
Alignment:
Q  58 cgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 132  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12859261 cgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 12859335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 36167746 - 36167821
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 132  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36167746 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 36167821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 19886647 - 19886571
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  19886647 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgtgctgggactcgttcctgactaccttgg 19886571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 32775246 - 32775170
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    |||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||    
T  32775246 tcgaagcacggtcgaggtgctgtggcacgtaaggtcgtgtgatcctacatgctgggactcgttcctgactaccttgg 32775170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 9454708 - 9454604
Alignment:
Q  28 aaacagagtaaatccgaaccagagtgaagtcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgacta 127  Q
    |||||||| ||| |||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||| |||||||| || ||| ||||||    
T  9454708 aaacagagcaaaaccgaaccagagtaaagtcaaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggaatcgttcttgacta 9454609  T
Q  128 ccttg 132  Q
    |||||    
T  9454608 ccttg 9454604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 53208700 - 53208775
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 132  Q
    ||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  53208700 tcgaaacacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 53208775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 7322928 - 7322854
Alignment:
Q  59 gaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  7322928 gaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctggctaccttgg 7322854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 32130231 - 32130160
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 128  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  32130231 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgcgactcgttcctgactac 32130160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 1915520 - 1915483
Alignment:
Q  96 cgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  1915520 cgatcctacgtgctgggactcgttcctgtctaccttgg 1915483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 7992423 - 7992498
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 132  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7992423 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 7992498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 32325826 - 32325902
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  32325826 tcgaagcacggtcgaggtgctgtggcacgtacgatcgtgcgatcctacgtgctgggactcgttcctgactaccttgg 32325902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 12904995 - 12905070
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 132  Q
    |||||||| ||| || ||| | ||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  12904995 tcgaagcatggtcgatgtgttgtggcacgtaagatcgtgcgatcctacgtgctggaactcgttcctgactaccttg 12905070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 34641930 - 34641982
Alignment:
Q  81 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    |||||||||||||||||||||||| |||||||||||  ||||| |||||||||    
T  34641930 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttgg 34641982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 28827539 - 28827502
Alignment:
Q  96 cgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  28827539 cgatcctacgtgctgggactcgttcctgtctaccttgg 28827502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 34784534 - 34784608
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactacctt 131  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34784534 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacctt 34784608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 3117778 - 3117707
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 128  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3117778 tcgaagcacggtcgaggtactgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 3117707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 29168536 - 29168617
Alignment:
Q  32 agagtaaatccgaaccagagtgaagtcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctggga 113  Q
    |||| ||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||    
T  29168536 agagcaaaaccgaaccagagtgaagtcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgagctggga 29168617  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 20900849 - 20900773
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  20900849 tcgaagcacagtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggacttgttcctgactaccttgg 20900773  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 1548212 - 1548139
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactacct 130  Q
    |||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  1548212 tcgaagcacgttcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggactcgttcctgactacct 1548139  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 3277591 - 3277518
Alignment:
Q  59 gaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 132  Q
    |||||||||| |||||| | |||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  3277591 gaagcacggtcgaggtgttgtggcacgtaagatcgtgcgatcctacatgctgggattcgttcctgactaccttg 3277518  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 23033471 - 23033396
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 132  Q
    |||||||||||| |||||| | |||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||    
T  23033471 tcgaagcacggtcgaggtgttgtggcacgtaagatcatgcgatcctacatgctgggactcgttcctgagtaccttg 23033396  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 15657383 - 15657346
Alignment:
Q  96 cgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  15657383 cgatcctacgtgctgggactcgttcctgactaccttgg 15657346  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 44673245 - 44673172
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactacct 130  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44673245 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 44673172  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 25438359 - 25438287
Alignment:
Q  60 aagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 132  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  25438359 aagcacggtcgaggtgctgtggcacgtaagatcatgcgatcctacgtgctgggactcgttcctgactaccttg 25438287  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 21006375 - 21006426
Alignment:
Q  81 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 132  Q
    ||||||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  21006375 gcacgtaagatcgtgcgatcctacgtgctgggactcgatcctggctaccttg 21006426  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 6536596 - 6536544
Alignment:
Q  81 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    |||||||||||||||||||||||| |||||||||||  ||||| |||||||||    
T  6536596 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttgg 6536544  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 24132262 - 24132211
Alignment:
Q  81 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 132  Q
    ||||||||||||||||||||||||||||||||| ||  ||||| ||||||||    
T  24132262 gcacgtaagatcgtgcgatcctacgtgctgggattcgatcctggctaccttg 24132211  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 37154923 - 37154972
Alignment:
Q  79 tggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 128  Q
    ||||||||||||||||||||||||||| || ||||||| ||| |||||||    
T  37154923 tggcacgtaagatcgtgcgatcctacgagccgggactcgttcttgactac 37154972  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 39574644 - 39574681
Alignment:
Q  96 cgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  39574644 cgatcctacgtgctgggactcgttcctgtctaccttgg 39574681  T

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Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 13425691 - 13425766
Alignment:
Q  57 tcgaagcacggtagaggtgctttggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttg 132  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  13425691 tcgaagcacggtcgaggtgctgtggcacataagatcgtgcgatcctacgtgctgcgactcgttcctgactaccttg 13425766  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 23963006 - 23963058
Alignment:
Q  81 gcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    |||||||||||| ||||||||||||||||||||| |  ||||| |||||||||    
T  23963006 gcacgtaagatcatgcgatcctacgtgctgggacccgatcctggctaccttgg 23963058  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 47523755 - 47523697
Alignment:
Q  28 aaacagagtaaatccgaaccagagtgaagtcgaagcacggtagaggtgctttggcacgt 86  Q
    |||||||| ||| |||||||| ||| |||||||||||| || |||||||| ||||||||    
T  47523755 aaacagagcaaaaccgaaccatagtaaagtcgaagcacagtcgaggtgctgtggcacgt 47523697  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 247184 - 247228
Alignment:
Q  89 gatcgtgcgatcctacgtgctgggactcattcctgactaccttgg 133  Q
    |||||| || |||||||||||||||||  ||||||||||||||||    
T  247184 gatcgtccgttcctacgtgctgggactggttcctgactaccttgg 247228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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