View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3679_low_4 (Length: 432)
Name: NF3679_low_4
Description: NF3679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3679_low_4 |
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| [»] scaffold0288 (1 HSPs) |
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| [»] scaffold0076 (2 HSPs) |
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Alignment Details
Target: scaffold0288 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 284 - 420
Target Start/End: Original strand, 9640 - 9779
Alignment:
| Q |
284 |
agaataaggctatccaacttaaggta--gcatatcctaccctaattccaccatagtcacaaaggaatcaaccttagtctacgaagacacactc-aaaaaa |
380 |
Q |
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| T |
9640 |
agaataaggctatccaacttaaggtaaagcatatcctagcttaattccatcatactcacaaagtaaccaaccttagtctacgaagacacactctaaaaaa |
9739 |
T |
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| Q |
381 |
ttaagctataatactaaagataacatttataatgtacctt |
420 |
Q |
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| T |
9740 |
ttaagctataatactaaagataacatttatggtgtacctt |
9779 |
T |
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Target: scaffold0076 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 59091 - 59119
Alignment:
| Q |
17 |
agctgcaggtgtaatcattaaagataatc |
45 |
Q |
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| T |
59091 |
agctgcaggtgtaatcattaaagataatc |
59119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 59152 - 59184
Alignment:
| Q |
85 |
aagcacaaaaggataaagttatgtaatagcgaa |
117 |
Q |
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| T |
59152 |
aagcacaaaaggattaagttatgtaatagcgaa |
59184 |
T |
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