View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3679_low_5 (Length: 411)
Name: NF3679_low_5
Description: NF3679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3679_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 32 - 393
Target Start/End: Original strand, 46030499 - 46030856
Alignment:
| Q |
32 |
aaaaactcacatatatgacaaacaagaaagtttagtgactaccacagaaaggtttgtcaagtttaataatattgattgatttattggttttctggtagaa |
131 |
Q |
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| T |
46030499 |
aaaaactcacatatatgacaaacaagaaagtttagtgactgccacagaaaggtttgtcaagtttaataatattg----atttattggttttctggtagaa |
46030594 |
T |
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| Q |
132 |
ataaatacacatgccatgacacaacaaaatttcaccaaatctaggttttatctcggaatttcttcatgtttttaaatatgagggatgctatacaccaggt |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46030595 |
ataaatacacatgccatgacacaacaaaatttcaccaaatctaggttttatctcggaatttcttcatgtttttaaatatgagggatgctatacaccaggt |
46030694 |
T |
|
| Q |
232 |
ttattactagttttcaggacaaatagaaaaggaaataatgtgctacatttcactataattttggttttatatatgcttgaattgaataccttagcctaca |
331 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46030695 |
ttattactagttttcaggataaatagaaaaggaaacaatgtgctacatttcactataatttcggttttatatatgcttgaattgaataccttagcctaca |
46030794 |
T |
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| Q |
332 |
tttcacaatatttgtctttaactgtcaaatttttatatatctgcaagacaaaatgtcagtct |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46030795 |
tttcacaatatttgtctttaactgtcaaatttttatatatctgcaagacaaaatgtcagtct |
46030856 |
T |
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