View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3680_high_13 (Length: 350)

Name: NF3680_high_13
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3680_high_13
NF3680_high_13
[»] chr8 (3 HSPs)
chr8 (1-339)||(9408132-9408467)
chr8 (83-120)||(29410787-29410824)
chr8 (84-120)||(13358005-13358041)
[»] chr1 (1 HSPs)
chr1 (81-121)||(30927776-30927816)
[»] chr3 (3 HSPs)
chr3 (103-137)||(31138128-31138162)
chr3 (87-161)||(41223047-41223121)
chr3 (67-116)||(37319943-37319992)
[»] chr2 (2 HSPs)
chr2 (84-158)||(34346298-34346372)
chr2 (73-121)||(20612583-20612631)
[»] scaffold0024 (1 HSPs)
scaffold0024 (84-116)||(149409-149441)
[»] chr7 (1 HSPs)
chr7 (85-121)||(39230524-39230560)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 9408467 - 9408132
Alignment:
Q  1 ttaattaaccaagttgtatgagctccagtagtaaaaggaactcctttcaaagatgtagcgaatgcagaatttgattctcaagagggaacaacgcttgacc 100  Q
    ||||||||||||||||  |||||||| |||| ||  |||  ||||  |||| | ||||||||| | || ||||||||||| |||||||||| | ||| ||    
T  9408467 ttaattaaccaagttgcttgagctccggtagcaa--ggagttcctaccaaaaacgtagcgaataccgagtttgattctcaggagggaacaatgtttggcc 9408370  T
Q  101 aatgtgcatgcctctatgcataagtcatattaatcgtttacatttaatgggtcggaaatcgatccnnnnnnnnnnnnnntaaagtaattcttaatttacc 200  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||    
T  9408369 aatgcgcatgcctctatgcatgagtcatattaatcgtttacatttaatgggtcggaaatcgatccaaaaacaaaaaaaataaagtaattcttaatttacc 9408270  T
Q  201 tttttcatataaactttatcacctttcttgattcatgtaaaatttgttaaagtgatgtatattttaagacgaatgaaataannnnnnnnnatgaactaaa 300  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||         ||||||||||    
T  9408269 tttttcatataaactttatcatctttctcgattcatgtaaaatttgttaaagtgatgtatattttaagatgaaggaaataa-ttttttttatgaactaaa 9408171  T
Q  301 aacgtggttaagcatcaaagtgaaatgtcgtgacctatg 339  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  9408170 aacgtggttaagcatcaaagtgaaatgccgtgacctatg 9408132  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 29410824 - 29410787
Alignment:
Q  83 agggaacaacgcttgaccaatgtgcatgcctctatgca 120  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29410824 agggaacaacgcttgaccaatgtgcatgcctctatgca 29410787  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 13358041 - 13358005
Alignment:
Q  84 gggaacaacgcttgaccaatgtgcatgcctctatgca 120  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  13358041 gggaacaacgtttggccaatgtgcatgcctctatgca 13358005  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 30927816 - 30927776
Alignment:
Q  81 agagggaacaacgcttgaccaatgtgcatgcctctatgcat 121  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  30927816 agagggaacaacgcttggccaatgtgcatgcctctacgcat 30927776  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 31138162 - 31138128
Alignment:
Q  103 tgtgcatgcctctatgcataagtcatattaatcgt 137  Q
    ||||||||||||||||||||||||| |||||||||    
T  31138162 tgtgcatgcctctatgcataagtcagattaatcgt 31138128  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 41223121 - 41223047
Alignment:
Q  87 aacaacgcttgaccaatgtgcatgcctctatgcataagtcatattaatcgtttacatttaatgggtcggaaatcg 161  Q
    ||||||| ||| |||||| ||||||||||| |||||||||  ||||||||  ||  |||||||| ||||||||||    
T  41223121 aacaacgtttggccaatgcgcatgcctctacgcataagtctgattaatcgcctatctttaatggatcggaaatcg 41223047  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 37319992 - 37319943
Alignment:
Q  67 gaatttgattctcaagagggaacaacgcttgaccaatgtgcatgcctcta 116  Q
    |||||||||||||| || | ||||||||||||| | ||||||||||||||    
T  37319992 gaatttgattctcaggatgaaacaacgcttgacaagtgtgcatgcctcta 37319943  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 34346372 - 34346298
Alignment:
Q  84 gggaacaacgcttgaccaatgtgcatgcctctatgcataagtcatattaatcgtttacatttaatgggtcggaaa 158  Q
    ||||||||| |||| ||| |||||||||||||| |||| ||||| |||||||| | || |||  |||||||||||    
T  34346372 gggaacaacacttggccagtgtgcatgcctctacgcatgagtcagattaatcgctcacctttggtgggtcggaaa 34346298  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 20612631 - 20612583
Alignment:
Q  73 gattctcaagagggaacaacgcttgaccaatgtgcatgcctctatgcat 121  Q
    |||||||| ||||||||||| |||| ||| || ||||||||||||||||    
T  20612631 gattctcaggagggaacaacacttggccagtgcgcatgcctctatgcat 20612583  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 149409 - 149441
Alignment:
Q  84 gggaacaacgcttgaccaatgtgcatgcctcta 116  Q
    |||||||||||||||||| ||||||||||||||    
T  149409 gggaacaacgcttgaccagtgtgcatgcctcta 149441  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 39230524 - 39230560
Alignment:
Q  85 ggaacaacgcttgaccaatgtgcatgcctctatgcat 121  Q
    |||||||| |||||| |||||||||||||||||||||    
T  39230524 ggaacaacacttgactaatgtgcatgcctctatgcat 39230560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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