View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3680_high_15 (Length: 307)
Name: NF3680_high_15
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 9408677 - 9408951
Alignment:
| Q |
1 |
ttcgtacactgttaagttacaactcactaaatgactgaccatacgtacaccaagttgaattcaatgattatttctctatgtacgattgttcagctaaatt |
100 |
Q |
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| T |
9408677 |
ttcgtacactgttaagttacaactcactaaatgactgaccattcgtacaccaagttgaattcaatgattatttctctatgtacgattgttcagctaaatt |
9408776 |
T |
|
| Q |
101 |
tcagcaacaacagtagttatcttttctttctttattgtgactgatcagcatgaacagttaaatattttatgtttatcgtactatttttctgtgcatgcag |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
9408777 |
tcagccacaacagtagttatcttttctttctttattgtgactgatcagcatgaacagttaaatatcttatgtttatcgtactatttttctgtgcatgaag |
9408876 |
T |
|
| Q |
201 |
ttttctttttcaattcattaatataccaaatataccaaagggt-ataccttttcgttaagttctaaatctaaaggatattactc |
283 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9408877 |
ttttctttttcaattcatt---------aatataccaaagggtaataccttttcgttaagttctaaatctaaaggatattactc |
9408951 |
T |
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