View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3680_high_18 (Length: 268)
Name: NF3680_high_18
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 43658894 - 43659137
Alignment:
| Q |
18 |
caagaatccaagaaaattataactttcttagttttagtttacaatcctctgtcgtggtgccccatggtgtcgtgtagtgcgtatgaattatcatccagcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43658894 |
caagaatccaagaaaattataactttcatagttttagtttacaatcctgtgtcgtggtgccccatggtgtcgtgtagtgcgtatgaattatcatccagtt |
43658993 |
T |
|
| Q |
118 |
tactgataaacttatcaattttttcttcacattagtgaaacttgccttcaaacaaccgttcttattcaatccactacaagtaatcacataacacattaga |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
43658994 |
tatagataaacttatcaattttttcttcacattagtgaaacttgccttcaaacaaccgttttcattcaatccactacaagtaatcacatagcacattaaa |
43659093 |
T |
|
| Q |
218 |
aaacttaaaattaatttcataactcgatatagaacaagaataat |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43659094 |
aaacttaaaattaatttcataactcgatatagaacaagaataat |
43659137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 34314155 - 34313918
Alignment:
| Q |
23 |
atccaagaaaattataactttcttagttttagtttacaatcctctgtcgtggtgccccatggtgtcgtgtagtgcgtatgaattatcatccagcctactg |
122 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||| |||| | ||||||||||||| ||||| ||| ||||| ||||| || ||||| ||||||| | |
|
|
| T |
34314155 |
atccaagaaaattataactttcatggttttagtttgcaattttgtgtcgtggtgcccggtggtg-cgtatagtgtgtatgcatcatcatgcagcctatcg |
34314057 |
T |
|
| Q |
123 |
ataaacttatcaattttttcttcacattagtgaaactt-gccttcaaacaaccgttcttattcaatccactacaagtaatcacataacacattagaaaac |
221 |
Q |
| |
|
||||| |||||||||||||||| |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34314056 |
gtaaaccaatcaattttttcttcatattaatgaaacttcgccttcaaacaatcgttctcattcaatccactacaagtaatcacataacacattagaaaac |
34313957 |
T |
|
| Q |
222 |
ttaaaattaatttcataactcgatatagaacaagaataat |
261 |
Q |
| |
|
|| ||||||||||||||||| || ||| |||||||||||| |
|
|
| T |
34313956 |
tt-aaattaatttcataacttgaaataaaacaagaataat |
34313918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 3762394 - 3762463
Alignment:
| Q |
194 |
caagtaatcacataacacat--tagaaaacttaaaattaatttcataactcgatatagaacaagaataat |
261 |
Q |
| |
|
|||||||||||||| ||| | |||||||||| ||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
3762394 |
caagtaatcacatatcacttagtagaaaacttgaaactaatttcataactcgaattagaaaaagaataat |
3762463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 32794100 - 32794066
Alignment:
| Q |
23 |
atccaagaaaattataactttcttagttttagttt |
57 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
32794100 |
atccaagaaatttataactttcttagttttagttt |
32794066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 32794267 - 32794214
Alignment:
| Q |
23 |
atccaagaaaattataactttcttagttttagtttacaatcctctgtcgtggtg |
76 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| ||||| |||||||||| |
|
|
| T |
32794267 |
atccaagaaatttatatctttcttagttttagtttgtgatcctatgtcgtggtg |
32794214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 32794204 - 32794156
Alignment:
| Q |
214 |
tagaaaacttaaaattaa-tttcataactcgatatagaacaagaataat |
261 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| || ||||||||||||| |
|
|
| T |
32794204 |
tagaaaacttaaaattaattttaataactcgaaatggaacaagaataat |
32794156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University