View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3680_high_20 (Length: 242)
Name: NF3680_high_20
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 36016966 - 36016757
Alignment:
| Q |
18 |
aatattagtttaacgaagattgaatcaaggccacatcgtaaccgtccgattaggcttgttgatgatgcaaatgttggaactgcgaagcattttgagtatt |
117 |
Q |
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| T |
36016966 |
aatattagtttaacgaagattgaatcaaggccacatcgtaaccgtccgattaggcttgttgatgatgcaaatgttggaactgcgaagcattttgagtatt |
36016867 |
T |
|
| Q |
118 |
tgttttatgttgattttgaagcttcaatggctgaagttagagcacaaaacgcgttggctgaagttcaggaattcacgtctttcttgagagttttgggtag |
217 |
Q |
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| T |
36016866 |
tgttttatgttgattttgaagcttcaatggctgaagttagagcacaaaacgcgttggctgaagttcaggaattcacgtctttcttgagagttttgggtag |
36016767 |
T |
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| Q |
218 |
ttaccctatg |
227 |
Q |
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|||||||||| |
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| T |
36016766 |
ttaccctatg |
36016757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 20138022 - 20138231
Alignment:
| Q |
18 |
aatattagtttaacgaagattgaatcaaggccacatcgtaaccgtccgattaggcttgttgatgatgcaaatgttggaactgcgaagcattttgagtatt |
117 |
Q |
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| T |
20138022 |
aatatcagcttaactaagattgaatctaggcctcatcgtggccgtccgattcgagttgtggatgatgaaagtgaaggaacagctaaacattttgagtata |
20138121 |
T |
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| Q |
118 |
tgttttatgttgattttgaagcttcaatggctgaagttagagcacaaaacgcgttggctgaagttcaggaattcacgtctttcttgagagttttgggtag |
217 |
Q |
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| T |
20138122 |
tgttttatattgattttgaggcttctatggctgaggttagggcacaaaatgcacttgctgaagttcaagagtttacatctttcttaagagttttggggag |
20138221 |
T |
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| Q |
218 |
ttaccctatg |
227 |
Q |
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||| |||||| |
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| T |
20138222 |
ttatcctatg |
20138231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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