View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3680_high_22 (Length: 210)
Name: NF3680_high_22
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 52564694 - 52564519
Alignment:
| Q |
19 |
tgaagggagatcagatataaatcagtgcaagcaaagtaggagnnnnnnnnnnnnn--gcaactgaaataaaacggtaatgtattcattgatcattttgtc |
116 |
Q |
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| T |
52564694 |
tgaagggagatcagatataaatcagtgcaagcaaagtaggagtgtatatatatatatgcaactgaaatgaaacggtaatgtattcattgatcattttgtc |
52564595 |
T |
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| Q |
117 |
cactaatatataaagaggattataagagagggatagaatgggatcatcacaagatatatgtggcaacatgtctact |
192 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52564594 |
cactaatatataaagaggattataagagagggagagaatgggatcatcacaagatatatgtggcaacatgtctact |
52564519 |
T |
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