View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3680_high_4 (Length: 561)
Name: NF3680_high_4
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 205 - 552
Target Start/End: Complemental strand, 32833586 - 32833239
Alignment:
| Q |
205 |
cttttggttgacactatactaactcacccttaatcaagcttgttaatctaattatcttcaatgcttaattgcatcttactttatgctgataaacttataa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833586 |
cttttggttgacactatactaactcacccttaatcaagcttgttaatctaattatcttaaatgcttaattgcatcttactttatgctgataaacttataa |
32833487 |
T |
|
| Q |
305 |
atgagtgggggaaaatattaattcagcataatatatatactttactttatgtttgtaatgttcacttgatgtaagtttccatttgatatattggattatg |
404 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32833486 |
atgagtggggtaaaatattaattcagcataatatatatactttactttatgtttgtaatgttcgcttgatgtaagtttccatttgatatattggattatg |
32833387 |
T |
|
| Q |
405 |
ttatgggatatgaacttgtgcttgaaattttagtgacggttattcttaaatttatgcatatctgtcaggataacaattttaaacattattaagtagtggc |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833386 |
ttatgggatatgaacttgtgcttgaaattttagtgacggttattcttaaatttatgcatatctgtcaggataacaattttaaacattattaagtagtggc |
32833287 |
T |
|
| Q |
505 |
ttttatttaaagataattaaaaagtggcttttatgatgtatgatgatg |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833286 |
ttttatttaaagataattaaaaagtggcttttatgatgtatgatgatg |
32833239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 32833794 - 32833617
Alignment:
| Q |
1 |
tgttgagaggtttctttctttctgcgaaaagagaatatggaacatgtgaaatgttattatgattgatttgtgatactgatcattattatatagtgagtga |
100 |
Q |
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| T |
32833794 |
tgttgagaggtttctttctttctgagaaaagagaatatggaaaatgtgaaatgttattatgattgatttgtgatactgatcattattatatagtgagtga |
32833695 |
T |
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| Q |
101 |
cttttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaactgacttctaactgttttc |
178 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833694 |
cgtttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaactgacttctaactgttttc |
32833617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 32840208 - 32840031
Alignment:
| Q |
1 |
tgttgagaggtttctttctttctgcgaaaagagaatatggaacatgtgaaatgttattatgattgatttgtgatactgatcattattatatagtgagtga |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840208 |
tgttgagaggtttctttctttctgagaaaagagaatatggaaaatgtgaaatgttattatgattgatttgtgatactgatcattattatatagtgagtga |
32840109 |
T |
|
| Q |
101 |
cttttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaactgacttctaactgttttc |
178 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840108 |
cgtttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaactgacttctaactgttttc |
32840031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 29605394 - 29605235
Alignment:
| Q |
1 |
tgttgagaggtttctttctttctgcgaaaagagaatatggaacatgtgaaatgttattatgattgatttgtgatactgatcattattatatagtgagtga |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29605394 |
tgttgagaggtttctttctttctgagaaaagagaatatggaaaatgtgaaatgttattatgattgatttgtgatactgatcattattatatagtgagtga |
29605295 |
T |
|
| Q |
101 |
cttttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaac |
160 |
Q |
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| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
29605294 |
cgtttcagtgtatgcttgtttgaattggaaacttgcttcacaagtaactctaaccgtaac |
29605235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 205 - 334
Target Start/End: Complemental strand, 32840008 - 32839879
Alignment:
| Q |
205 |
cttttggttgacactatactaactcacccttaatcaagcttgttaatctaattatcttcaatgcttaattgcatcttactttatgctgataaacttataa |
304 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
32840008 |
cttttggttgacactatactaactcacacttaatcaagcttgttaatctaattctcttcaatgtttaattgcatcttactttatgctggtaaacttataa |
32839909 |
T |
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| Q |
305 |
atgagtgggggaaaatattaattcagcata |
334 |
Q |
| |
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|||||||||| ||||||||||||||||||| |
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| T |
32839908 |
atgagtggggaaaaatattaattcagcata |
32839879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 32839845 - 32839780
Alignment:
| Q |
341 |
atactttactttatgtttgtaatgttcacttgatgtaagtttccatttgatatattggattatgtt |
406 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||| || |||||||||||||| |
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| T |
32839845 |
atactttacattatgtttgtaatgttcacttgatttaagtttccatttcatttattggattatgtt |
32839780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 29605080 - 29605042
Alignment:
| Q |
268 |
cttaattgcatcttactttatgctgataaacttataaat |
306 |
Q |
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||||||||||||||||||| ||||||||||| ||||||| |
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| T |
29605080 |
cttaattgcatcttactttgtgctgataaacatataaat |
29605042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 19946889 - 19947009
Alignment:
| Q |
29 |
aagagaatatggaacatgtgaaatgttattatgattgatttgtgatactgatcattattatatagtgagtgacttttcagtgtatgcttgtttgaattgg |
128 |
Q |
| |
|
|||||| |||| || ||||||||||||||| ||||| |||||||||| || |||||||||| | |||| |||| |||||||||||||| ||| | | |
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| T |
19946889 |
aagagagtatgaaaaatgtgaaatgttattgtgattattttgtgatacacattgttattatatact-agtg-cttt--agtgtatgcttgttggaactag |
19946984 |
T |
|
| Q |
129 |
aagcttgcttcacaagtaactctaa |
153 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
19946985 |
aagcttgcttcacaagtaactctaa |
19947009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 19947235 - 19947296
Alignment:
| Q |
107 |
agtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaactgacttct |
168 |
Q |
| |
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||||||||||| || ||| | ||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
19947235 |
agtgtatgctttttggaactagaaacttgcttcacaagtaactctaactgtaacagacttct |
19947296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 19961148 - 19961187
Alignment:
| Q |
268 |
cttaattgcatcttactttatgctgataaacttataaatg |
307 |
Q |
| |
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||||| ||||||||||||| |||||||||||||||||||| |
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| T |
19961148 |
cttaactgcatcttactttgtgctgataaacttataaatg |
19961187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 161
Target Start/End: Original strand, 28405871 - 28405906
Alignment:
| Q |
126 |
tggaagcttgcttcacaagtaactctaactgtaact |
161 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |
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| T |
28405871 |
tggaaacttgcttcacaagtaactctaactgtaact |
28405906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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