View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3680_high_5 (Length: 534)
Name: NF3680_high_5
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 5170663 - 5170142
Alignment:
| Q |
1 |
ataaaattctcatgcgtttagaattttaatgttaggtttttaatcatatcatttaaattaatggaggtcacattgtgtgtcctgcagcagatgccatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5170663 |
ataaaattctcatgcgtttagaattttaatgttaggtttttaatcatatcatttaaattaatggaggtcacattgtgtgtcctgcagcagatgccatgat |
5170564 |
T |
|
| Q |
101 |
gccatgcattactatttatatatcaaaattccaatgcagtagtacatcccaaatatagtaaatttttctagtccaacaattctttgattccaccagctcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5170563 |
gccatgcattactatttatatatcaaaattccaatgcagtagtacatcccaaatatagtaaatttttctagtccaacaattctttgattccaccagctcc |
5170464 |
T |
|
| Q |
201 |
tcttttgtaaattctattctattatttaacattaagaaaacaaattctattacaggcacaacctatatggcaaatgaaacatgagggttttcacgtgcga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5170463 |
tcttttgtaaattctattctattatttaacattaagaaaacaaattctattacaggcacaacc--tatggcaaatgaaacatgagggttttcacgtgcga |
5170366 |
T |
|
| Q |
301 |
acattcctgnnnnnnnattaatcttttctatcacgagagtccaaattgcatgccccctatcataaaagaagagcaagtttaaatgctttgatcttgaaaa |
400 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5170365 |
acattcctg--tttttattaatcttttctatcacgagagtccaaattgcatgccccctatcataaaagaagagcaagtttaaatgctttgatcttgaaaa |
5170268 |
T |
|
| Q |
401 |
agaacggtcctcattatcaaatgtatatacattaatatatagctgcaaaaaagcttgaggaaggaactttgctnnnnnnngccaaggacctagagagttg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5170267 |
agaacggtcctcattatcaaatgtatatacattaatatatagctgcaaaaaagcttgaggaaggaactttgctaaaaaaagccaaggacctagagagttg |
5170168 |
T |
|
| Q |
501 |
acatattattcatgctatcctatgct |
526 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5170167 |
acatattattcatgctatcctatgct |
5170142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University