View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3680_low_11 (Length: 385)

Name: NF3680_low_11
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3680_low_11
NF3680_low_11
[»] chr6 (15 HSPs)
chr6 (19-191)||(4254627-4254800)
chr6 (248-375)||(4254443-4254570)
chr6 (19-111)||(4258041-4258137)
chr6 (279-369)||(34187630-34187721)
chr6 (110-185)||(4257937-4258008)
chr6 (248-346)||(6197945-6198044)
chr6 (254-360)||(30465338-30465445)
chr6 (263-369)||(3807213-3807321)
chr6 (263-360)||(4408915-4409013)
chr6 (261-360)||(17957178-17957278)
chr6 (250-360)||(10313444-10313555)
chr6 (320-371)||(5644601-5644653)
chr6 (261-346)||(24672416-24672502)
chr6 (321-374)||(11458643-11458696)
chr6 (321-372)||(843984-844036)
[»] chr2 (8 HSPs)
chr2 (279-372)||(8794739-8794832)
chr2 (279-370)||(27694423-27694516)
chr2 (252-374)||(24490454-24490577)
chr2 (261-360)||(30640945-30641044)
chr2 (248-346)||(31994657-31994756)
chr2 (261-309)||(39293083-39293131)
chr2 (266-349)||(34904164-34904247)
chr2 (268-345)||(29242495-29242573)
[»] chr8 (9 HSPs)
chr8 (248-371)||(10467391-10467516)
chr8 (248-373)||(26938772-26938899)
chr8 (263-360)||(16483918-16484016)
chr8 (250-369)||(42023896-42024017)
chr8 (248-369)||(39344718-39344841)
chr8 (261-316)||(32797081-32797136)
chr8 (261-345)||(12597002-12597087)
chr8 (321-374)||(26938533-26938587)
chr8 (262-370)||(35054939-35055049)
[»] chr7 (12 HSPs)
chr7 (252-371)||(13009272-13009393)
chr7 (261-374)||(27567569-27567684)
chr7 (261-358)||(28098679-28098777)
chr7 (267-360)||(22485092-22485185)
chr7 (261-360)||(30851817-30851917)
chr7 (252-368)||(11297898-11298014)
chr7 (261-360)||(20132202-20132302)
chr7 (290-368)||(30851547-30851627)
chr7 (265-371)||(34471378-34471486)
chr7 (321-368)||(25411457-25411505)
chr7 (261-349)||(28564981-28565069)
chr7 (262-330)||(33991965-33992033)
[»] chr4 (7 HSPs)
chr4 (262-374)||(40391038-40391152)
chr4 (261-371)||(15025924-15026036)
chr4 (250-372)||(38377932-38378055)
chr4 (261-307)||(10574082-10574128)
chr4 (320-369)||(31049885-31049935)
chr4 (297-345)||(6449606-6449655)
chr4 (297-371)||(48282889-48282965)
[»] scaffold0233 (1 HSPs)
scaffold0233 (261-373)||(16830-16943)
[»] chr3 (9 HSPs)
chr3 (252-373)||(39340908-39341032)
chr3 (252-349)||(44446783-44446881)
chr3 (265-371)||(34359483-34359592)
chr3 (262-372)||(20315035-20315147)
chr3 (252-315)||(28769472-28769535)
chr3 (266-370)||(54783217-54783322)
chr3 (248-310)||(41544536-41544598)
chr3 (324-373)||(44648251-44648301)
chr3 (261-370)||(50334542-50334653)
[»] chr5 (14 HSPs)
chr5 (19-111)||(24093340-24093440)
chr5 (261-350)||(19343700-19343790)
chr5 (248-372)||(38948658-38948783)
chr5 (252-370)||(5459047-5459167)
chr5 (252-315)||(26724251-26724314)
chr5 (252-348)||(16089824-16089921)
chr5 (297-372)||(22860871-22860948)
chr5 (266-368)||(1298845-1298951)
chr5 (254-370)||(3746826-3746943)
chr5 (287-371)||(35270847-35270932)
chr5 (263-370)||(39057091-39057200)
chr5 (265-372)||(15070070-15070180)
chr5 (297-373)||(35529755-35529832)
chr5 (261-311)||(36235902-36235952)
[»] chr1 (5 HSPs)
chr1 (261-360)||(16545330-16545430)
chr1 (262-372)||(33752867-33752979)
chr1 (270-373)||(23230789-23230894)
chr1 (265-346)||(3891594-3891676)
chr1 (261-369)||(29307512-29307622)
[»] scaffold0020 (1 HSPs)
scaffold0020 (265-371)||(152078-152186)
[»] scaffold0005 (1 HSPs)
scaffold0005 (252-346)||(253680-253775)
[»] scaffold0720 (1 HSPs)
scaffold0720 (279-360)||(7414-7495)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 6e-84; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 4254800 - 4254627
Alignment:
Q  19 ggttctagcttattacacccggaaaaacatgtcg-tcattttcatacgaattttcaaacatgcagtggtcactaccatgaaacctgttgcccctgatgat 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  4254800 ggttctagcttattacacccggaaaaacatgtcggtcattttcatacgaattttcaaacatgcagtggtcactaccatgaaacttgttgcccccgatgat 4254701  T
Q  118 gaagctgttccagtatttacttacatactacatactggaacaatatttcactcttagactatggtttagtcctc 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4254700 gaagctgttccagtatttacttacatactacatactggaacaatatttcactcttagactatggtttagtcctc 4254627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 248 - 375
Target Start/End: Complemental strand, 4254570 - 4254443
Alignment:
Q  248 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaatttta 347  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  4254570 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaataaggattaaaagtaaataaaattttgtgaagactaaacttaaaagcttgtaatttta 4254471  T
Q  348 tatggactaaaaaatatttaaccctatg 375  Q
    || ||| |||||||||||||||||||||    
T  4254470 tacggattaaaaaatatttaaccctatg 4254443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 4258137 - 4258041
Alignment:
Q  19 ggttctagcttattacacccggaaaaacatgtc-gtcattttcatacgaattttca---aacatgcagtggtcactaccatgaaacctgttgcccct 111  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||    
T  4258137 ggttctagcttattacacccggaaaaacatgtcagtaattttcatacgaattttcacagaacatgcagtggtcactacaatgaaacctgttgcccct 4258041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 279 - 369
Target Start/End: Original strand, 34187630 - 34187721
Alignment:
Q  279 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaac 369  Q
    ||||||| |||||||||| ||||| |||||||| |||||| ||||||||||| |||  |||||||||| || |||||||||| |||||||||    
T  34187630 taaaatgcaaatagggatgaaaagagaataaaaatttgtggagactaaacttaaaaatttgtaattttgtagggactaaaaacatatttaac 34187721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 4258008 - 4257937
Alignment:
Q  110 ctgatgatgaagctgttccagtatttacttacatactacatactggaacaatatttcactcttagactatggttta 185  Q
    ||||||||||||||||| |||||||||     ||||||||||||| |||||||||| |||||||||||||||||||    
T  4258008 ctgatgatgaagctgttacagtatttat----atactacatactgcaacaatattttactcttagactatggttta 4257937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 346
Target Start/End: Original strand, 6197945 - 6198044
Alignment:
Q  248 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaatttt 346  Q
    |||||||||||  ||||||||||||||| | ||||||| ||||| |||  ||||||||||||| |||| ||   ||||||||||||| ||||||||||||    
T  6197945 ggacacttttattcctccaaaatagtccctataaaatgtaaataaggaccaaaagtgaataaacttttcgtagggactaaacttgaaggcttgtaatttt 6198044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 360
Target Start/End: Complemental strand, 30465445 - 30465338
Alignment:
Q  254 ttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtga-agactaaacttgaaagcttgtaattttatatgg 352  Q
    |||||| |||||||||||||   | ||| ||| || ||||||||| ||||||||||| ||||   | |||||||||||||||| ||||||||||||| ||    
T  30465445 ttttaatcctccaaaatagtgtctataagatgtaagtagggattagaagtgaataaattttttatagagactaaacttgaaagtttgtaattttataagg 30465346  T
Q  353 actaaaaa 360  Q
    ||||||||    
T  30465345 actaaaaa 30465338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 369
Target Start/End: Original strand, 3807213 - 3807321
Alignment:
Q  263 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag--actaaacttgaaagcttgtaattttatatggactaaaaa 360  Q
    ||||||||||||||| ||||||||||| | |||  ||||||||||||| |||| || ||  |||||||||||||| |||||||||| || | ||||||||    
T  3807213 tccaaaatagtccttataaaatgaaaacaaggaccaaaagtgaataaactttt-tgtaggaactaaacttgaaagtttgtaattttttaggaactaaaaa 3807311  T
Q  361 -atatttaac 369  Q
     |||||||||    
T  3807312 catatttaac 3807321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 4409013 - 4408915
Alignment:
Q  263 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 360  Q
    ||||||||||||| | ||||||| ||||||| | ||||||||||| |||||||||| | || ||||||| |||| ||||||||||| |  |||||||||    
T  4409013 tccaaaatagtccctataaaatgtaaataggaactaaaagtgaataaaaattttgtaaggattaaacttaaaagtttgtaattttacagagactaaaaa 4408915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 360
Target Start/End: Original strand, 17957178 - 17957278
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 359  Q
    ||||||||||||||| | ||||||  ||||||||| ||||| ||||| |||| ||| | | |||||||  |||||||||||||||||||| | |||||||    
T  17957178 cctccaaaatagtccctataaaatacaaatagggactaaaaatgaataaaaaatttataaggactaaatgtgaaagcttgtaattttataagaactaaaa 17957277  T
Q  360 a 360  Q
    |    
T  17957278 a 17957278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 360
Target Start/End: Original strand, 10313444 - 10313555
Alignment:
Q  250 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattt-tgtgaagactaaacttgaaagcttgtaattttat 348  Q
    |||||||||  ||||||||||||||| | ||||||| ||||| ||| ||||| | |||||  ||| |||  ||||||||||| ||||||||||||||| |    
T  10313444 acacttttagtcctccaaaatagtccctataaaatgcaaataaggactaaaaataaataatttttctgtagagactaaacttaaaagcttgtaattttgt 10313543  T
Q  349 atggactaaaaa 360  Q
    | | ||||||||    
T  10313544 aagaactaaaaa 10313555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 371
Target Start/End: Complemental strand, 5644653 - 5644601
Alignment:
Q  320 agactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccc 371  Q
    |||||||||||||||  ||||||||||||| |||||||||| |||||||||||    
T  5644653 agactaaacttgaaaatttgtaattttataaggactaaaaacatatttaaccc 5644601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 24672416 - 24672502
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaatttt 346  Q
    ||||||||||||||| | ||| ||| |||||||||  || ||||||||||| ||||||   ||||||||| ||||| ||||||||||    
T  24672416 cctccaaaatagtccatttaagatgcaaatagggaccaatagtgaataaaatttttgtagggactaaactagaaagtttgtaatttt 24672502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 11458696 - 11458643
Alignment:
Q  321 gactaaacttgaaagcttgtaattttatatggactaaaaaatatttaaccctat 374  Q
    ||||||||| |||| ||||||||||| || ||||||||| |||||||| |||||    
T  11458696 gactaaactcgaaaacttgtaattttgtagggactaaaatatatttaatcctat 11458643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 844036 - 843984
Alignment:
Q  321 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 372  Q
    ||||||||||||||| | | | |||||||||||||||||| ||||||||||||    
T  844036 gactaaacttgaaaggtcgcacttttatatggactaaaaacatatttaaccct 843984  T

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Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 8794739 - 8794832
Alignment:
Q  279 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 372  Q
    ||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  8794739 taaaatgcaaatagggactaaaagtgaataaaatttt-tgtagactaaacttgaaagcttgcaattttatagggactaaaaacatatttaaccct 8794832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 279 - 370
Target Start/End: Complemental strand, 27694516 - 27694423
Alignment:
Q  279 taaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaacc 370  Q
    |||||||  ||||||||||||||||||||||| |||| ||  ||| |||||||||||  ||||||||||||| |||||||||| ||||||||||    
T  27694516 taaaatgtgaatagggattaaaagtgaataaattttttgtagagattaaacttgaaaatttgtaattttatagggactaaaaacatatttaacc 27694423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 374
Target Start/End: Complemental strand, 24490577 - 24490454
Alignment:
Q  252 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatg 351  Q
    |||||||  |||| |||||||||  | ||||||| ||||||||| |||||||||||||  |||| | |  ||||||||| |||||||||||||||| | |    
T  24490577 acttttagtcctctaaaatagtctctataaaatgcaaatagggactaaaagtgaataattttttttaagaactaaacttaaaagcttgtaattttacagg 24490478  T
Q  352 gactaaaaa-atatttaaccctat 374  Q
     ||||||||  |||||||||||||    
T  24490477 aactaaaaacgtatttaaccctat 24490454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 360
Target Start/End: Complemental strand, 30641044 - 30640945
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 360  Q
    ||||||||||||||| | ||||||| ||||||||| |||||||||||||||  ||    ||| |||||||||||||||| ||||| ||| ||| ||||||    
T  30641044 cctccaaaatagtccctttaaaatgcaaatagggactaaaagtgaataaaacatttccgagattaaacttgaaagcttgaaatttaatagggattaaaaa 30640945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 346
Target Start/End: Complemental strand, 31994756 - 31994657
Alignment:
Q  248 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 346  Q
    |||||||| ||| ||||||||||||||| | ||||||| |||| |||||||||| ||||||||  ||||||  ||| || |||| |||||||||||||||    
T  31994756 ggacacttgtaatcctccaaaatagtccctataaaatgcaaattgggattaaaaatgaataaattttttgtagagattatacttaaaagcttgtaatttt 31994657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 39293131 - 39293083
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa 309  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  39293131 cctccaaaatagtccatataaaatgaaaatagggactaaaagtgaataa 39293083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 34904164 - 34904247
Alignment:
Q  266 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttata 349  Q
    |||||||||||| ||||||| ||||||||| |||| |  |||||  |||| ||| | ||||||||||||||||||||||||||||    
T  34904164 aaaatagtccttttaaaatgcaaatagggactaaatgcaaataagttttt-tgatggactaaacttgaaagcttgtaattttata 34904247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 29242573 - 29242495
Alignment:
Q  268 aatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattt 345  Q
    |||||||| | ||||||| ||||||||  |||||||||||||  |||| || | |||||||||| ||||||||||||||    
T  29242573 aatagtccctataaaatgcaaataggggctaaaagtgaataatttttttgtaaggactaaacttaaaagcttgtaattt 29242495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 371
Target Start/End: Complemental strand, 10467516 - 10467391
Alignment:
Q  248 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 346  Q
    |||||||||||  ||||||||||||||| | ||||||| ||||||||| ||||| ||||||||  |||||| | ||||||||||||||||||||||||||    
T  10467516 ggacacttttagtcctccaaaatagtccctataaaatgcaaatagggactaaaaatgaataaattttttgtaaggactaaacttgaaagcttgtaatttt 10467417  T
Q  347 atatggac-taaaaaatatttaaccc 371  Q
     || |||| ||||| |||||||||||    
T  10467416 ttagggacttaaaatatatttaaccc 10467391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 373
Target Start/End: Complemental strand, 26938899 - 26938772
Alignment:
Q  248 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 346  Q
    |||||||||||  ||| ||||||||||| | ||||||| ||||||||| ||||||||||||||  ||||||   |||||||| | |||||||||||||||    
T  26938899 ggacacttttagtccttcaaaatagtccctttaaaatgcaaatagggactaaaagtgaataaattttttgtagggactaaacataaaagcttgtaatttt 26938800  T
Q  347 atatggactaaaaa-atatttaacccta 373  Q
     || |||||||||| |||||||||||||    
T  26938799 gtagggactaaaaacatatttaacccta 26938772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 360
Target Start/End: Original strand, 16483918 - 16484016
Alignment:
Q  263 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttatatggactaaaaa 360  Q
    ||||||||||||  ||||||||| ||||||| | |||||||||||| ||||||   ||| ||||||||||||| |||||||||||||| ||||||||||    
T  16483918 tccaaaatagtctctgtaaaatgcaaataggaactaaaagtgaatacaatttttataaggactaaacttgaaaacttgtaattttatagggactaaaaa 16484016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 369
Target Start/End: Complemental strand, 42024017 - 42023896
Alignment:
Q  250 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttat 348  Q
    |||||||||  ||||||||||||||| | ||||| | ||||||||| ||||| |||||||||||||   | | |||||||||||||| |||||||||| |    
T  42024017 acacttttagtcctccaaaatagtccatataaaaagcaaatagggactaaaaatgaataaaatttttgtatgtactaaacttgaaagtttgtaattttgt 42023918  T
Q  349 atggactaaaaa-atatttaac 369  Q
    | |||||||||| |||||||||    
T  42023917 agggactaaaaacatatttaac 42023896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 369
Target Start/End: Original strand, 39344718 - 39344841
Alignment:
Q  248 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 346  Q
    |||||||||||  ||||||||||||||  | ||||||| ||||||||| ||||||||||||||  |||| |  |||| |||||| |||||||||||||||    
T  39344718 ggacacttttagtcctccaaaatagtctctataaaatgtaaatagggactaaaagtgaataaattttttctagagaccaaacttaaaagcttgtaatttt 39344817  T
Q  347 atatggactaaaaa-atatttaac 369  Q
      | |||||||||| |||||||||    
T  39344818 gcagggactaaaaacatatttaac 39344841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 32797081 - 32797136
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttg 316  Q
    ||||||||||||||||| ||||||| || |||||| ||||||||||||||||||||    
T  32797081 cctccaaaatagtccttataaaatgcaattagggactaaaagtgaataaaattttg 32797136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 12597002 - 12597087
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattt 345  Q
    ||||||||||||||| | ||||||| ||||||||| |||| |||||| |||| |||||   ||||| |||||||||||||||||||    
T  12597002 cctccaaaatagtccctataaaatgcaaatagggactaaacgtgaataaaaaatttgtagggactatacttgaaagcttgtaattt 12597087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 26938587 - 26938533
Alignment:
Q  321 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccctat 374  Q
    |||||||||| ||||||||||||||| || |||||||||| ||||||||||||||    
T  26938587 gactaaacttaaaagcttgtaattttgtagggactaaaaacatatttaaccctat 26938533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 370
Target Start/End: Complemental strand, 35055049 - 35054939
Alignment:
Q  262 ctccaaaatagtccttgtaaaa-tgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggact-aaaa 359  Q
    |||||||||||||| | ||||| || || || ||| ||||| |||||||| ||||||    ||||||||||||| ||||||||||| || ||||| ||||    
T  35055049 ctccaaaatagtccctataaaaatgcaattaaggactaaaaatgaataaatttttgtaggaactaaacttgaaaacttgtaattttgtaaggactgaaaa 35054950  T
Q  360 aatatttaacc 370  Q
     ||||||||||    
T  35054949 catatttaacc 35054939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 252 - 371
Target Start/End: Complemental strand, 13009393 - 13009272
Alignment:
Q  252 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatat 350  Q
    |||||||  |||||||| |||||| ||||||||| |||||| ||||||  |||||||||| ||||||   |||||||||||||||||||||||||||||     
T  13009393 acttttagtcctccaaattagtccctgtaaaatgtaaatagagattaattgtgaataaaacttttgtagggactaaacttgaaagcttgtaattttatag 13009294  T
Q  351 ggactaaaaa-atatttaaccc 371  Q
    |||||||||| |||||||||||    
T  13009293 ggactaaaaatatatttaaccc 13009272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 261 - 374
Target Start/End: Complemental strand, 27567684 - 27567569
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 359  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||||| |||| |||| |   |||||||||||||| ||||||||||| || ||  |||||    
T  27567684 cctccaaaatagtccttataaaatgcaaatatggattaaaagtgaagaaaacttttttagggactaaacttgaaaacttgtaattttgtaggggttaaaa 27567585  T
Q  360 a-atatttaaccctat 374  Q
    | ||||||||||||||    
T  27567584 acatatttaaccctat 27567569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 358
Target Start/End: Original strand, 28098679 - 28098777
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa-aattttgtgaagactaaacttgaaagcttgtaattttatatggactaaa 358  Q
    ||||||||||||||| | ||||||| ||||||||| ||||||| |||||   |||||| || ||||||||| ||| |||||||||||||| | ||||||    
T  28098679 cctccaaaatagtccctataaaatgcaaatagggactaaaagtaaataatttttttgtaaaaactaaacttaaaaccttgtaattttataggaactaaa 28098777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 360
Target Start/End: Complemental strand, 22485185 - 22485092
Alignment:
Q  267 aaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 360  Q
    ||||||||||| ||||||| ||||||||| ||||||| ||||||| |||||   |||||||||| | |||| ||||||||  | ||||||||||    
T  22485185 aaatagtccttataaaatgcaaatagggactaaaagtaaataaaaatttgtacggactaaacttaagagctggtaattttggagggactaaaaa 22485092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 360
Target Start/End: Complemental strand, 30851917 - 30851817
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtga-agactaaacttgaaagcttgtaattttatatggactaaaa 359  Q
    |||||||||||||   | ||| ||| || ||||||||| ||||||||||| ||||   | |||||||||||||||| ||||||||||||| |||||||||    
T  30851917 cctccaaaatagtgtctataagatgtaagtagggattagaagtgaataaattttttatagagactaaacttgaaagtttgtaattttataaggactaaaa 30851818  T
Q  360 a 360  Q
    |    
T  30851817 a 30851817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 368
Target Start/End: Original strand, 11297898 - 11298014
Alignment:
Q  252 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatg 351  Q
    |||||||  ||||||||||||||| | ||||||  |||||||||  ||||||||  ||||  ||  || ||||||||||||||||||||||||| ||| |    
T  11297898 acttttagtcctccaaaatagtccctttaaaatacaaatagggacaaaaagtgataaaaaaattccga-gactaaacttgaaagcttgtaatttaatagg 11297996  T
Q  352 gactaaaaa-atatttaa 368  Q
    || |||||| ||||||||    
T  11297997 gattaaaaacatatttaa 11298014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 360
Target Start/End: Original strand, 20132202 - 20132302
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 359  Q
    ||||||||||||||| | ||||||  ||||||||| ||||| ||||| |||| ||||| |  ||||||  | |||||||||||||||||| | |||||||    
T  20132202 cctccaaaatagtccctataaaatacaaatagggactaaaaatgaataaaaaatttgtaagaactaaatgtcaaagcttgtaattttataggaactaaaa 20132301  T
Q  360 a 360  Q
    |    
T  20132302 a 20132302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 30851627 - 30851547
Alignment:
Q  290 tagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaa 368  Q
    |||||| ||||||||||||||  |||| |  |||||||||||||||  ||||||||||||| |||||||||| ||||||||    
T  30851627 tagggactaaaagtgaataaatgttttatagagactaaacttgaaaatttgtaattttataaggactaaaaacatatttaa 30851547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 34471378 - 34471486
Alignment:
Q  265 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaata-aaattttgtgaagactaaacttgaaagcttgtaattttatatggacta-aaaaat 362  Q
    ||||||||||  | ||||||| ||||||||| |||||||||||| |  ||||||  ||| ||||||| ||||||| ||||||| || |||||| ||| ||    
T  34471378 caaaatagtctctataaaatgcaaatagggactaaaagtgaatacattttttgtagagattaaactttaaagcttataattttgtaaggactagaaacat 34471477  T
Q  363 atttaaccc 371  Q
    |||||||||    
T  34471478 atttaaccc 34471486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 25411505 - 25411457
Alignment:
Q  321 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaa 368  Q
    |||||||||||||||||| |||||||| | |||||||||| ||||||||    
T  25411505 gactaaacttgaaagcttctaattttacagggactaaaaacatatttaa 25411457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 349
Target Start/End: Complemental strand, 28565069 - 28564981
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttata 349  Q
    ||||||||||||| | | ||||||  ||||||| ||||||||| ||||||  ||||| ||||||||| || |||  || ||||||||||    
T  28565069 cctccaaaatagttcatataaaatacaaataggaattaaaagtaaataaatctttgtaaagactaaatttaaaaatttataattttata 28564981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 33991965 - 33992033
Alignment:
Q  262 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaactt 330  Q
    |||||||||| ||||| ||||||  ||||||||| |||| ||||||||||  || || |||||||||||    
T  33991965 ctccaaaatattccttataaaatacaaatagggactaaacgtgaataaaaaattttggagactaaactt 33992033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 374
Target Start/End: Original strand, 40391038 - 40391152
Alignment:
Q  262 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 360  Q
    |||||||||||||| | ||||||| ||||||||| ||||||||||| |||| |||||   |||||||||| ||| |||||||||||||| ||||||||||    
T  40391038 ctccaaaatagtccctataaaatgcaaatagggactaaaagtgaataaaaaatttgtagggactaaacttaaaaacttgtaattttatagggactaaaaa 40391137  T
Q  361 -atatttaaccctat 374  Q
     ||||||||||||||    
T  40391138 catatttaaccctat 40391152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 15025924 - 15026036
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 359  Q
    ||||||||||||||||| ||||||  ||||||||| ||||| ||||||||| ||||||   |||||||||| |||| |||||||||| ||  ||||||||    
T  15025924 cctccaaaatagtccttataaaatataaatagggactaaaaatgaataaaatttttgtagggactaaacttaaaagtttgtaattttgtagtgactaaaa 15026023  T
Q  360 a-atatttaaccc 371  Q
    | |||||||||||    
T  15026024 acatatttaaccc 15026036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 250 - 372
Target Start/End: Original strand, 38377932 - 38378055
Alignment:
Q  250 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttata 349  Q
    |||||||||  ||||||||||||||| | ||||||| ||||||||| |||||||||||||||  || | | ||||||| |||||| ||||| ||||| ||    
T  38377932 acacttttagtcctccaaaatagtccctataaaatgcaaatagggaataaaagtgaataaaaaattttaaggactaaatttgaaaacttgttattttgta 38378031  T
Q  350 tggac-taaaaaatatttaaccct 372  Q
     | || ||||| ||||||||||||    
T  38378032 agaacttaaaacatatttaaccct 38378055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 10574082 - 10574128
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat 307  Q
    ||||||||||||||| ||||||||| ||||||||| |||| ||||||    
T  10574082 cctccaaaatagtccctgtaaaatgcaaatagggactaaaggtgaat 10574128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 31049935 - 31049885
Alignment:
Q  320 agactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaac 369  Q
    |||||||||||||||| |||||||||| || |||||||||| |||||||||    
T  31049935 agactaaacttgaaagtttgtaattttgtaaggactaaaaacatatttaac 31049885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 6449655 - 6449606
Alignment:
Q  297 taaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattt 345  Q
    |||||||||||||| |||| || | |||||||||||||||||||||||||    
T  6449655 taaaagtgaataaattttttgtaaggactaaacttgaaagcttgtaattt 6449606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 48282889 - 48282965
Alignment:
Q  297 taaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccc 371  Q
    |||||||||||||| |||| ||   |||||||||||||||||| ||||| | || |||||||||| |||||||||||    
T  48282889 taaaagtgaataaattttttgtagggactaaacttgaaagcttttaattgtgtacggactaaaaatatatttaaccc 48282965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 261 - 373
Target Start/End: Complemental strand, 16943 - 16830
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 360  Q
    |||| |||||||||| | ||||||  ||||||||| ||||||||||||||| ||||  | ||||||||||||||| | ||||||||||| ||||||||||    
T  16943 cctctaaaatagtccctataaaatacaaatagggactaaaagtgaataaaaatttggtaggactaaacttgaaagttggtaattttatagggactaaaaa 16844  T
Q  361 -atatttaacccta 373  Q
     |||||||||||||    
T  16843 catatttaacccta 16830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 252 - 373
Target Start/End: Original strand, 39340908 - 39341032
Alignment:
Q  252 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaaga--ctaaacttgaaagcttgtaattttata 349  Q
    |||||||  |||||||||||||| || ||||||||||||||  | |||||||||||||  |||| || |||  |||||||||||||||||||||||||||    
T  39340908 acttttagtcctccaaaatagtcattataaaatgaaaatagaaagtaaaagtgaataattttttttgtagagactaaacttgaaagcttgtaattttata 39341007  T
Q  350 tggactaaaaa-atatttaacccta 373  Q
     ||| |||||| |||||||||||||    
T  39341008 gggattaaaaacatatttaacccta 39341032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 349
Target Start/End: Complemental strand, 44446881 - 44446783
Alignment:
Q  252 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttata 349  Q
    |||||||  ||||||||||||||| | ||||||| ||||||||| ||||||||||| |||||||||| |  ||||||| ||||||||||||||||||||    
T  44446881 acttttagtcctccaaaatagtccctataaaatgcaaatagggactaaaagtgaataaaaattttgtaagaactaaacgtgaaagcttgtaattttata 44446783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 34359483 - 34359592
Alignment:
Q  265 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaa-ttttatatggactaaaaa-a 361  Q
    ||||| ||||| | ||||||| ||||||| ||||||||||||||||| ||||||   |||||||||||||||||||||| ||||||| |||||||||| |    
T  34359483 caaaaaagtccctataaaatgtaaataggaattaaaagtgaataaaatttttgtagggactaaacttgaaagcttgtaatttttatagggactaaaaaca 34359582  T
Q  362 tatttaaccc 371  Q
    ||||||||||    
T  34359583 tatttaaccc 34359592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 262 - 372
Target Start/End: Original strand, 20315035 - 20315147
Alignment:
Q  262 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 360  Q
    ||||||||| |||| | ||||||| ||||||||| ||||||||||||||  |||| |  |||||||||||||||| |||||||||| ||  |||||||||    
T  20315035 ctccaaaattgtccctataaaatgtaaatagggactaaaagtgaataaattttttatagagactaaacttgaaagtttgtaattttgtagtgactaaaaa 20315134  T
Q  361 -atatttaaccct 372  Q
     ||||||||||||    
T  20315135 catatttaaccct 20315147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 28769535 - 28769472
Alignment:
Q  252 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt 315  Q
    |||||||| ||||||||||||||||| ||||||| ||||| ||| |||||||||||||| ||||    
T  28769535 acttttaatcctccaaaatagtccttataaaatgcaaataaggactaaaagtgaataaattttt 28769472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 370
Target Start/End: Original strand, 54783217 - 54783322
Alignment:
Q  266 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atat 364  Q
    |||||||||| ||||||||  ||||| ||||||||||  ||| |||  |||| | ||||| |||| ||||||||||||||| || |||||||||| ||||    
T  54783217 aaaatagtccctgtaaaattcaaataaggattaaaagcaaattaaaaattgtaaggactacacttaaaagcttgtaattttgtaaggactaaaaacatat 54783316  T
Q  365 ttaacc 370  Q
    ||||||    
T  54783317 ttaacc 54783322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 41544598 - 41544536
Alignment:
Q  248 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa 310  Q
    |||||||||||| | ||||||||||| | ||||||||| | ||||||| ||||||||||||||    
T  41544598 ggacacttttaatcttccaaaatagttcctgtaaaatgcatatagggactaaaagtgaataaa 41544536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 373
Target Start/End: Original strand, 44648251 - 44648301
Alignment:
Q  324 taaacttgaaagcttgtaattttatatggact-aaaaaatatttaacccta 373  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  44648251 taaacttgaaagtttgtaattttatagggactaaaaaaatatttaacccta 44648301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 50334653 - 50334542
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 359  Q
    |||| |||||||||| | ||||||| ||||||| | ||||||||||||||  ||||||   ||||||| |||||| ||| |||||||| | ||| |||||    
T  50334653 cctctaaaatagtccctataaaatgcaaataggaactaaaagtgaataaattttttgtagggactaaatttgaaaacttataattttagaaggattaaaa 50334554  T
Q  360 a-atatttaacc 370  Q
    | ||||||||||    
T  50334553 acatatttaacc 50334542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 24093340 - 24093440
Alignment:
Q  19 ggttctagcttattacacccggaaaaacatgtc-gtcattttcatacgaattttca-------aacatgcagtggtcactaccatgaaacctgttgcccc 110  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||       ||||||||  |||||||||||||||||| ||||||||    
T  24093340 ggttctagcttattacaaccggaaaaacatgtcagtcattttcatacgaattttcagataattaacatgcaacggtcactaccatgaaaccagttgcccc 24093439  T
Q  111 t 111  Q
    |    
T  24093440 t 24093440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 350
Target Start/End: Original strand, 19343700 - 19343790
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaaga--ctaaacttgaaagcttgtaattttatat 350  Q
    |||||||| |||||||| ||||||| ||||||||| |||||||||||||| |||| || ||   ||||||||||||||||||||||||||||    
T  19343700 cctccaaactagtccttataaaatgcaaatagggactaaaagtgaataaattttt-tgcagggcctaaacttgaaagcttgtaattttatat 19343790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 248 - 372
Target Start/End: Original strand, 38948658 - 38948783
Alignment:
Q  248 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaatttta 347  Q
    |||||||||||  || || ||||||||| | ||||||  |||||||||  ||||||||||||  ||||||  ||||||||||||||| |||||||||||     
T  38948658 ggacacttttagtccacccaaatagtccctataaaattcaaatagggaccaaaagtgaataatgttttgtatagactaaacttgaaaacttgtaattttg 38948757  T
Q  348 tatggactaaaaa-atatttaaccct 372  Q
    ||   |||||||| ||||||||||||    
T  38948758 tagaaactaaaaacatatttaaccct 38948783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 370
Target Start/End: Complemental strand, 5459167 - 5459047
Alignment:
Q  252 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatat 350  Q
    |||||||  ||||||||||||||| | ||||||| ||||||||||||||| ||||| ||||  ||||   |||||||||| ||| ||| ||||||||||     
T  5459167 acttttattcctccaaaatagtccctataaaatgcaaatagggattaaaaatgaataaaaaaattgtagggactaaacttaaaaacttataattttatag 5459068  T
Q  351 ggactaaaaa-atatttaacc 370  Q
     ||||||||| ||||||||||    
T  5459067 agactaaaaacatatttaacc 5459047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 26724251 - 26724314
Alignment:
Q  252 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt 315  Q
    |||||||  ||||||||||||||||| |||||||||||||| || |||||||||||||| ||||    
T  26724251 acttttagtcctccaaaatagtccttataaaatgaaaatagagactaaaagtgaataaattttt 26724314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 348
Target Start/End: Original strand, 16089824 - 16089921
Alignment:
Q  252 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttat 348  Q
    |||||||  |||| |||||||||| | ||||||| ||||| ||| ||||||||||| |||| ||||| | |||||||| |||||| ||||||||||||    
T  16089824 acttttagtcctctaaaatagtccctataaaatgcaaatatggactaaaagtgaataaaaaatttgtaaggactaaacgtgaaagtttgtaattttat 16089921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 372
Target Start/End: Complemental strand, 22860948 - 22860871
Alignment:
Q  297 taaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 372  Q
    ||||||||||||||| |||||| || ||||||||| ||||||||||||||| || |||||||||| | ||||||||||    
T  22860948 taaaagtgaataaaagttttgtaaaaactaaactttaaagcttgtaattttgtagggactaaaaacacatttaaccct 22860871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 1298845 - 1298951
Alignment:
Q  266 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa---attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-a 361  Q
    |||||||||| | ||||||| ||||||||| ||||||||||||||    ||||||   ||||||| || ||||||||||||||| || |||||||||| |    
T  1298845 aaaatagtccctataaaatgcaaatagggactaaaagtgaataaattttttttgtagggactaaatttaaaagcttgtaattttgtagggactaaaaaca 1298944  T
Q  362 tatttaa 368  Q
    |||||||    
T  1298945 tatttaa 1298951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 370
Target Start/End: Original strand, 3746826 - 3746943
Alignment:
Q  254 ttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatgga 353  Q
    |||||| ||||||||| ||||| | ||||||| |||||  ||||| ||||||||||| ||||||  ||||||||||| ||   || ||| ||| |||| |    
T  3746826 ttttaatcctccaaaacagtccctataaaatgtaaatatagattataagtgaataaatttttgtagagactaaacttaaatagttataactttgtatgaa 3746925  T
Q  354 ctaaaaa-atatttaacc 370  Q
    ||||||| ||||||||||    
T  3746926 ctaaaaacatatttaacc 3746943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 371
Target Start/End: Original strand, 35270847 - 35270932
Alignment:
Q  287 aaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaa-aaatatttaaccc 371  Q
    |||||||||||||||||||||||| |||| |   ||||||||||||||| || ||||||| || | |||||| | |||||||||||    
T  35270847 aaatagggattaaaagtgaataaatttttatagggactaaacttgaaagtttttaattttgtaggaactaaagacatatttaaccc 35270932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 370
Target Start/End: Complemental strand, 39057200 - 39057091
Alignment:
Q  263 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa- 360  Q
    |||||||||||||   ||||||| ||||| ||||||||||||||||||  ||||||  |||| |||||| |||  |||||||||| ||  |||||||||     
T  39057200 tccaaaatagtcccaataaaatgtaaataaggattaaaagtgaataaattttttgtagagaccaaacttaaaaatttgtaattttgtagagactaaaaat 39057101  T
Q  361 atatttaacc 370  Q
    ||||||||||    
T  39057100 atatttaacc 39057091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 372
Target Start/End: Original strand, 15070070 - 15070180
Alignment:
Q  265 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaa--gactaaacttgaaagcttgtaattttatatggactaaaaa-a 361  Q
    ||||||||||  | ||||||| ||||||||| |||||||||||||| |||| || |  |||||||||| |||  |||||||||| ||  ||||||||| |    
T  15070070 caaaatagtctctataaaatgtaaatagggactaaaagtgaataaatttttttgtagggactaaacttaaaaatttgtaattttttagagactaaaaata 15070169  T
Q  362 tatttaaccct 372  Q
    |||||| ||||    
T  15070170 tatttatccct 15070180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 35529755 - 35529832
Alignment:
Q  297 taaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttatatggactaaaaa-atatttaacccta 373  Q
    ||||||||||||||||||| ||| | |||||||||||||  | || |||||||| |||||||||| |||||||||||||    
T  35529755 taaaagtgaataaaatttt-tgagggactaaacttgaaacgtcgtgattttatagggactaaaaacatatttaacccta 35529832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 36235902 - 36235952
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa 311  Q
    ||||||||||||||||| ||||||| ||||| ||| ||||| |||||||||    
T  36235902 cctccaaaatagtccttataaaatgcaaataaggactaaaaatgaataaaa 36235952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 360
Target Start/End: Complemental strand, 16545430 - 16545330
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaa 359  Q
    |||||||||||||||||  |||||| |||| || | |||||||||||||| |||| ||  ||||||||||| ||| |||||||||||||| |||||||||    
T  16545430 cctccaaaatagtccttacaaaatgcaaattggtagtaaaagtgaataaattttttgtacagactaaacttaaaaacttgtaattttatagggactaaaa 16545331  T
Q  360 a 360  Q
    |    
T  16545330 a 16545330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 262 - 372
Target Start/End: Complemental strand, 33752979 - 33752867
Alignment:
Q  262 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatt-ttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 360  Q
    |||||||||||||| | ||||||| ||||| ||| |||||||||||||||   ||||   || |||||| ||||||||||||||||||| ||||||||||    
T  33752979 ctccaaaatagtccctataaaatgtaaataaggactaaaagtgaataaaaaaattgtagggattaaactggaaagcttgtaattttatagggactaaaaa 33752880  T
Q  361 -atatttaaccct 372  Q
     ||||||||||||    
T  33752879 catatttaaccct 33752867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 373
Target Start/End: Complemental strand, 23230894 - 23230789
Alignment:
Q  270 tagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atattta 367  Q
    |||||||| ||||||| | |||| || ||||||||||| ||||||||||   ||||||||||| ||  |||||||||| ||  ||||||||| |||||||    
T  23230894 tagtccttataaaatgtatatagtgactaaaagtgaataaaaattttgtagggactaaacttgtaaatttgtaattttgtagagactaaaaacatattta 23230795  T
Q  368 acccta 373  Q
    ||||||    
T  23230794 acccta 23230789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 3891594 - 3891676
Alignment:
Q  265 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaat-tttgtgaagactaaacttgaaagcttgtaatttt 346  Q
    ||||||||||  | ||||||  ||||||||||||||||| ||||||||  ||||  ||| ||||||||||| |||||||||||    
T  3891594 caaaatagtctctataaaatacaaatagggattaaaagtaaataaaataattgtagagattaaacttgaaaacttgtaatttt 3891676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 369
Target Start/End: Complemental strand, 29307622 - 29307512
Alignment:
Q  261 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggac-taaa 358  Q
    ||||||||||||||| | ||||||| ||||||||| ||| ||| ||| |||| |||||   ||||||||||  ||  ||||||||||||| |||| ||||    
T  29307622 cctccaaaatagtccctataaaatgcaaatagggactaagagttaataaaaaatttgtagggactaaacttttaaaattgtaattttatagggacttaaa 29307523  T
Q  359 aaatatttaac 369  Q
    | |||||||||    
T  29307522 acatatttaac 29307512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 371
Target Start/End: Complemental strand, 152186 - 152078
Alignment:
Q  265 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-at 362  Q
    ||||||||||  | ||||||| ||||| ||| ||||||||| ||||| |||||| ||||||||||||| |||| | ||||||| || |||||||||| ||    
T  152186 caaaatagtctctataaaatgcaaataaggactaaaagtgagtaaaacttttgtaaagactaaacttgtaagcctataattttgtagggactaaaaacat 152087  T
Q  363 atttaaccc 371  Q
    |||||||||    
T  152086 atttaaccc 152078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 346
Target Start/End: Complemental strand, 253775 - 253680
Alignment:
Q  252 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa-aattttgtgaagactaaacttgaaagcttgtaatttt 346  Q
    |||||||| ||||||||||||||| | ||||||| | |||| |||||||| |||||||   ||||||  |||||||| || |||||||||||||||    
T  253775 acttttaatcctccaaaatagtccctataaaatgcagatagagattaaaaatgaataatttttttgtagagactaaatttaaaagcttgtaatttt 253680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 360
Target Start/End: Complemental strand, 7495 - 7414
Alignment:
Q  279 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 360  Q
    ||||||| ||||||||| ||||| |||||||||  || |  ||| |||||||||||||||||||||| ||| ||| ||||||    
T  7495 taaaatgcaaatagggactaaaaatgaataaaaaattttcgagattaaacttgaaagcttgtaatttaatagggattaaaaa 7414  T

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