View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3680_low_13 (Length: 370)
Name: NF3680_low_13
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 3080419 - 3080759
Alignment:
| Q |
11 |
atcatcatattattttcactattgtgataataattaccaacatcaccataattattaaacacttgaaaactagtagaagctatggagaaataaagatttt |
110 |
Q |
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| T |
3080419 |
atcatcatattattttcactattttgataataattaccaacatcaccataattgttaaacacttgaaaactagtagaaggtatggaggaataaagatttt |
3080518 |
T |
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| Q |
111 |
gttgttgtaaatggttgttttgcttacaataagctaatagccattttaattgatctaactctttagaagacttatttatcatacctgcatacatatgaat |
210 |
Q |
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| T |
3080519 |
gttgttgtaaatggttgttttgcttacaataagctaatagccattttaattgatctaactctttagaagacttatttatcatacctgcatacatatgaat |
3080618 |
T |
|
| Q |
211 |
aacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatctctttgaccaccatccttaatttcg |
310 |
Q |
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| T |
3080619 |
aacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatctctttgaccaccatccttaatttcg |
3080718 |
T |
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| Q |
311 |
tttagtatcttctgtatgtttgaaacaccaaacaaacgatg |
351 |
Q |
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| T |
3080719 |
tttagtatcttctgtatgtttgaaacaccaaacaaacgatg |
3080759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 324980 - 325058
Alignment:
| Q |
208 |
aataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatct |
286 |
Q |
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| T |
324980 |
aataagaccaagacatccatgacttgggtatcttgcacgcatttctgactcaaaaataatcgacttcattgcttcatct |
325058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 3104488 - 3104414
Alignment:
| Q |
205 |
atgaataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgc |
279 |
Q |
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| T |
3104488 |
atgaataacaccaacacatccatgaacggggaattctgcacgaatatccgactcaaaaataattgaatccattgc |
3104414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 3093939 - 3094019
Alignment:
| Q |
208 |
aataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatctct |
288 |
Q |
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| T |
3093939 |
aataacatcaagacatccaccaacagggaattgagcacgcatatccgactcaataataattgatttcattgcatcatctct |
3094019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 351
Target Start/End: Complemental strand, 36915244 - 36915101
Alignment:
| Q |
208 |
aataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatctctttgaccaccatccttaatt |
307 |
Q |
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||||||||||||||||||||||| || || ||||||||||| | |||||||| ||| || ||| |||| || ||||| ||||| || ||||||| || |
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| T |
36915244 |
aataacaccaagacatccatgaacgggaaattttgcacgaatatccgactcaataattatggatctcatcgcaacatctttttgatcatcatccttgata |
36915145 |
T |
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| Q |
308 |
tcgtttagtatcttctgtatgtttgaaacaccaaacaaacgatg |
351 |
Q |
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|| ||||||||| | |||||||| |||||||||||||||||||| |
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| T |
36915144 |
tcttttagtatcctttgtatgttggaaacaccaaacaaacgatg |
36915101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 351
Target Start/End: Complemental strand, 41122232 - 41122042
Alignment:
| Q |
161 |
tgatctaactctttagaagacttatttatcatacctgcatacatatgaataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaa |
260 |
Q |
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||||||||||| | | |||||| |||| ||| ||| | ||||||||||||||||| ||||||||| | ||||| ||||||| || | |||||||| |
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| T |
41122232 |
tgatctaactcatcaacagacttctttaacatgcctccgtacatatgaataacaccgagacatccagtagcagggaatcttgcacgcatatccgactcaa |
41122133 |
T |
|
| Q |
261 |
caataattgatttcattgcttcatctctttgaccaccatccttaatttcgtttagtatcttctgtatgtttgaaacaccaaacaaacgatg |
351 |
Q |
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|||||||||||||||||||||||| || || |||| | ||| | ||||| |||||| ||||| |||||||||||||||||||| |
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| T |
41122132 |
agataattgatttcattgcttcatcttttagatgttcatcatcaatattctttagcatcttcaccatgttggaaacaccaaacaaacgatg |
41122042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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