View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3680_low_2 (Length: 669)
Name: NF3680_low_2
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_low_2 |
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| [»] scaffold0291 (1 HSPs) |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: scaffold0291 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 18 - 659
Target Start/End: Original strand, 4290 - 4931
Alignment:
| Q |
18 |
acattaacccttaaataccaaagtttcggattaacataaacctttgatctaatattgtaaactccttcacctttaactgaagctgaatctgaatgccatg |
117 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4290 |
acattaacccttaaataccaaagtttaggattaacataaacctttgatctaatattgtaaactccttcacctttaactgaagctgaatctgaatgccatg |
4389 |
T |
|
| Q |
118 |
cctcaggaaaagcttcatcagcttgtgttcccatccaaacagctaacataacttcacctcttgttcttgtttcacctttcaaattccctagtctatacca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4390 |
cctcaggaaaagcttcatcagcttgtgttcccatccaaacagctaacataacttcacctcttgttcttgtttcacctttcaaattccctagtctatacca |
4489 |
T |
|
| Q |
218 |
ttgcggagccaaaggactatctggtggaactcttgttggaacttcatgcatatcaaattcaacttttccaatataatcatctctagctaccatctctttg |
317 |
Q |
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|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4490 |
ttgcggcgccaaaggactatctggtggaactcttgttggaacttcatgcatatcaaattcaacttttccaatataatcatctctagctaccatctctttg |
4589 |
T |
|
| Q |
318 |
tctcttacaaatacttcaacaaccgatgattgtatcttctccttcgagaaagcgaaaacttgcttccattcggggtttgttttcttctcaaagtgtcttg |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4590 |
tctcttacaaatacttcaacaaccgatgattgtatcttctccttcgagaaagcgaaaacttgcttccattcggggtttgttttcttctcaaagtgtcttg |
4689 |
T |
|
| Q |
418 |
tttttcctttgtagttgccaactttcacttcaacataaggatctacatttcctgtgactggatttggtggcaattctttggctttgacaacacgaacata |
517 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4690 |
tttttcctttgtagttgccaactttcacttcaacataaggatctacatttcctgtgactggatttggtggcaattctttggctttgacaacacgaacata |
4789 |
T |
|
| Q |
518 |
gaggtagaacatctgttccacaaggtcgtaagtgctcgttgctctttcgctgtatagccaaccagttccgcctcgttgtcctccatgtggccatttttct |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4790 |
gaggtagaacatctgttccacaaggtcgtaagtgctcgttgctctttcgctgtatagccaaccagttccgcctcgttgtcctccatgtggccatttttct |
4889 |
T |
|
| Q |
618 |
cctagctctggctttgtgtcttttagcttgtaatcatctgtg |
659 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
4890 |
cctagctctggctttgtgtcttttagcttgtaatcatctgtg |
4931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 11578206 - 11578273
Alignment:
| Q |
108 |
gaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacagctaacataacttcacc |
175 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||| |
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| T |
11578206 |
gaatgccatgcctcaggaaaagactcatcagcttgtgttcccatccaaacagcaagcataatttcacc |
11578273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 7916486 - 7916625
Alignment:
| Q |
18 |
acattaacccttaaataccaaagtttcggattaacataaacctttgatctaatattgtaaactccttcacctttaactgaagctgaatctgaatgccatg |
117 |
Q |
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||||| || ||||||||||| ||||| ||| ||||||||||||||||| || ||| |||| |||||||| | || | ||| | ||| |||||||| | |
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| T |
7916486 |
acattgactcttaaataccatagttttggagacacataaacctttgatctgatgttgaaaacaccttcaccgtagacagtagcagcatcagaatgccaag |
7916585 |
T |
|
| Q |
118 |
cctcaggaaaagcttcatcagcttgtgttcccatccaaac |
157 |
Q |
| |
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| || | |||||||||||||||||||||||||||||||| |
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| T |
7916586 |
catctgagaaagcttcatcagcttgtgttcccatccaaac |
7916625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 7916675 - 7916726
Alignment:
| Q |
207 |
agtctataccattgcggagccaaaggactatctggtggaactcttgttggaa |
258 |
Q |
| |
|
||||| ||||| || ||||||| |||||||||||||||||||||||||||| |
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|
| T |
7916675 |
agtctgtaccactgaggagccagtggactatctggtggaactcttgttggaa |
7916726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 21198512 - 21198566
Alignment:
| Q |
105 |
tctgaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacag |
159 |
Q |
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||||||||||| || || |||||| |||||||||||| |||||||||||||||| |
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| T |
21198512 |
tctgaatgccaagcatcgggaaaactttcatcagcttgagttcccatccaaacag |
21198566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 24951227 - 24951261
Alignment:
| Q |
210 |
ctataccattgcggagccaaaggactatctggtgg |
244 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
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| T |
24951227 |
ctataccattgcggagccaaagggctatctggtgg |
24951261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 27254354 - 27254408
Alignment:
| Q |
105 |
tctgaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacag |
159 |
Q |
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||||||||||| || || |||||| |||||||||||| |||||||||||||||| |
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| T |
27254354 |
tctgaatgccaagcatcgggaaaactttcatcagcttgagttcccatccaaacag |
27254408 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 207 - 302
Target Start/End: Original strand, 8417437 - 8417532
Alignment:
| Q |
207 |
agtctataccattgcggagccaaaggactatctggtggaactcttgttggaacttcatgcatatcaaattcaacttttccaatataatcatctcta |
302 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| | ||||| | ||| ||||||| |||||||||||| |
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| T |
8417437 |
agtctataccattgaggagccaatggactatctggtggaactctagttggaacttcattgaggtcaaaagctactcttccaatgtaatcatctcta |
8417532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 8417248 - 8417315
Alignment:
| Q |
18 |
acattaacccttaaataccaaagtttcggattaacataaacctttgatctaatattgtaaactccttc |
85 |
Q |
| |
|
||||| ||||||| |||||| |||||||| |||||||||||||||||| |||||| |||| ||||| |
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| T |
8417248 |
acattgacccttagataccatagtttcggtgaaacataaacctttgatctgatattgaaaacaccttc |
8417315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 36811355 - 36811411
Alignment:
| Q |
104 |
atctgaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacagc |
160 |
Q |
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|||||| ||||| |||||||||||||||||||||||||| || |||||||||||||| |
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| T |
36811355 |
atctgagtgccacgcctcaggaaaagcttcatcagcttgagtacccatccaaacagc |
36811411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 357 - 457
Target Start/End: Original strand, 36811602 - 36811702
Alignment:
| Q |
357 |
tccttcgagaaagcgaaaacttgcttccattcggggtttgttttcttctcaaagtgtcttgtttttcctttgtagttgccaactttcacttcaacataag |
456 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| || || || ||||||||||| || || || ||||||||||||| |||| || ||||||||||||| |
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|
| T |
36811602 |
tccttcgaaaaagcgaaaacctgattccattcaggattagtcttcttctcaaaatgcctcgtggttcctttgtagttaccaagcttgacttcaacataag |
36811701 |
T |
|
| Q |
457 |
g |
457 |
Q |
| |
|
| |
|
|
| T |
36811702 |
g |
36811702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 29048198 - 29048154
Alignment:
| Q |
101 |
tgaatctgaatgccatgcctcaggaaaagcttcatcagcttgtgt |
145 |
Q |
| |
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|||||| |||||||| || ||||||||||| |||||||||||||| |
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|
| T |
29048198 |
tgaatcggaatgccaagcatcaggaaaagcctcatcagcttgtgt |
29048154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 2766313 - 2766379
Alignment:
| Q |
96 |
gaagctgaatctgaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacagcta |
162 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| |||||||| ||||| || || ||||||||||||| |
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|
| T |
2766313 |
gaagctgcatctgaatgccatgcctcagaaaatgcttcatctgcttgagtaccaatccaaacagcta |
2766379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 14516 - 14554
Alignment:
| Q |
209 |
tctataccattgcggagccaaaggactatctggtggaac |
247 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
14516 |
tctataccattgcggcgccaaaggactatctgggggaac |
14554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 11704391 - 11704444
Alignment:
| Q |
212 |
ataccattgcggagccaaaggactatctggtggaactcttgttggaacttcatg |
265 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| | ||| ||||| ||||| |
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|
| T |
11704391 |
ataccattccggagccaacggactatctggtggaacacgtgtaggaacatcatg |
11704444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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