View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3680_low_21 (Length: 276)
Name: NF3680_low_21
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 33994592 - 33994327
Alignment:
| Q |
1 |
cactgttcattaatatggagaatgataacaaaggtgatagatctccaactgcatttgccacatctggattaggggtgaaaatgtaagcaagtcttccttt |
100 |
Q |
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| T |
33994592 |
cactgttcattaatatggagaatgataacaaaggtgatagatctccaactgcatttgccacatctggattaggggtgaaaatgtaagcaagtcttccttt |
33994493 |
T |
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| Q |
101 |
taggaatagaaagatcaagaacagcacaaatccaatggaaaatgatgtgagcactgttatcacaatggagaattttgctgccttggaactccctctgcct |
200 |
Q |
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| T |
33994492 |
taggaatagaaagatcaagaacagcacaaatccaatggaaaatgatgtgagcactgttatcacaatggagaattttgctgccttggaactccctctgcct |
33994393 |
T |
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| Q |
201 |
agttcatttgacaccctaacactgcnnnnnnntgtaatttagcctaacatttagtactgacctatg |
266 |
Q |
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| T |
33994392 |
agttcatttgacaccctaacactgcaaaaaaatgtaatttagcctaacatttagtactgacctatg |
33994327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33985193 - 33984970
Alignment:
| Q |
1 |
cactgttcattaatatggagaatgataacaaaggtgatagatctccaactgcatttgccacatctggattaggggtgaaaatgtaagcaagtcttccttt |
100 |
Q |
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| T |
33985193 |
cactgttcaacaatatggagattgacaacaaaggtgataaatcaccaactgctttagccacatctgggtctggggtgaaaatgtaagcaagtctttcctt |
33985094 |
T |
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| Q |
101 |
taggaatagaaagatcaagaacagcacaaatccaatggaaaatgatgtgagcactgttatcacaatggagaattttgctgccttggaactccctctgcct |
200 |
Q |
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| T |
33985093 |
taggaatagaaagatcaagaatagcacaaatcctatgaaaaatgatgtcagcagtgttatcacaatggaaaattttgctgccttcgaatcccctcctcca |
33984994 |
T |
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| Q |
201 |
agttcatttgacaccctaacactg |
224 |
Q |
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| T |
33984993 |
agttcgtttgccaccctaacactg |
33984970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 9235614 - 9235810
Alignment:
| Q |
29 |
caaaggtgatagatctccaactgcatttgccacatctggattaggggtgaaaatgtaagcaagtcttccttttaggaatagaaagatcaagaacagcaca |
128 |
Q |
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||||| ||||| ||||||||| |||| |||||||| ||||| | ||||||||||||||||||||| | || | ||||| |||| ||||| | | |
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| T |
9235614 |
caaagatgataaatctccaacagcatcagccacatcaggatttgtagtgaaaatgtaagcaagtctttccttcaagaataagaagacaaagaaaaaaatg |
9235713 |
T |
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| Q |
129 |
aatccaatggaaaatgatgtgagcactgttatcacaatggagaattttgctgccttggaactccctctgcctagttcatttgacaccctaacactgc |
225 |
Q |
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||||||||| |||||||||||| |||| |||| ||| || |||||||| | | ||||| ||||| || |||||||||| ||| | |||||||| |
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| T |
9235714 |
catccaatggcaaatgatgtgagaactgatatcttaattgaaaattttgcatctcttgaacttcctcttccaagttcatttgccactcgaacactgc |
9235810 |
T |
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