View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3680_low_26 (Length: 223)
Name: NF3680_low_26
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 42088757 - 42088551
Alignment:
| Q |
1 |
ttgtatgatttgtttcttgtagatctttgagtacttgagattgtaatattgatgaaagagcaaaaataggagagatagccatagtagaatgtgaactact |
100 |
Q |
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| T |
42088757 |
ttgtatgatttgtttcttgtagatctttgagtacttgagattgtaatattgatgaaagagcaaaaataggagagatagccatagtagaatgtgaactact |
42088658 |
T |
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| Q |
101 |
tgataaattttgagggccatggtgatggaggaagagaaggagatggtaaatggtgagaaggggaagcatggagcatgaattaagatatggaggaagaaac |
200 |
Q |
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| T |
42088657 |
tgataaattttgagggccatggtgatggaggaagagaaggagatggtaaatggtgagaaggggaagcatggagcatgaattaagatatggaggaagaaac |
42088558 |
T |
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| Q |
201 |
tcttaag |
207 |
Q |
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||||||| |
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| T |
42088557 |
tcttaag |
42088551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 42084068 - 42083998
Alignment:
| Q |
33 |
acttgagattgtaatattgatgaaagagcaaaaataggagagatagccatagtagaatgtgaactacttga |
103 |
Q |
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| T |
42084068 |
acttgagattgtaatgcccatgaaagagcaaaaataggaaagatagccatagaagaatgtgaattacttga |
42083998 |
T |
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