View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3680_low_3 (Length: 652)

Name: NF3680_low_3
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3680_low_3
NF3680_low_3
[»] chr2 (6 HSPs)
chr2 (21-346)||(14658540-14658863)
chr2 (526-605)||(14662397-14662476)
chr2 (349-442)||(45336618-45336708)
chr2 (362-445)||(14662651-14662731)
chr2 (527-602)||(45336329-45336403)
chr2 (527-602)||(45338641-45338715)
[»] chr5 (3 HSPs)
chr5 (349-442)||(32798365-32798455)
chr5 (527-602)||(32798076-32798150)
chr5 (527-602)||(32800388-32800462)
[»] chr8 (2 HSPs)
chr8 (349-442)||(44732202-44732292)
chr8 (527-602)||(44734222-44734296)
[»] chr3 (7 HSPs)
chr3 (524-605)||(48027288-48027369)
chr3 (524-596)||(48025108-48025180)
chr3 (524-605)||(48024548-48024629)
chr3 (526-605)||(48023999-48024078)
chr3 (527-602)||(5354612-5354686)
chr3 (527-602)||(28784583-28784657)
chr3 (527-602)||(48707695-48707769)
[»] chr7 (2 HSPs)
chr7 (529-605)||(13111118-13111194)
chr7 (349-445)||(13110845-13110939)
[»] chr4 (2 HSPs)
chr4 (526-605)||(7230963-7231041)
chr4 (527-602)||(22804681-22804755)
[»] chr1 (1 HSPs)
chr1 (527-602)||(1550226-1550300)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 346
Target Start/End: Complemental strand, 14658863 - 14658540
Alignment:
Q  21 cttataagtctaacttcttatgtgaaactctccaattatatgtgacccaagagtaaccagcagcaacgtaaatgtatttacactgaaatcaattttgtag 120  Q
    |||| |||||| |||||||||||||||||||||||| ||  ||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||    
T  14658863 cttacaagtcttacttcttatgtgaaactctccaataat--gtgacccaagagtaaccagcaacaatgtaaatgtatttatactgaaatcaattttgtag 14658766  T
Q  121 aatcaagatcatgtaaaatcaaatttataaacatacataatggtttttagctaaaaggaatatcaattaggtcagaagtaacttagtgctatgatcatcg 220  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||    
T  14658765 aatcaagatcatgcaaaatcaaatttataagcatacataatgatttttagctaaaaagaatatcaattaggtcaaaagtaacttagtactatgatcatcg 14658666  T
Q  221 aatatgtgccctttgtttctaacaacactggttggagaagtgtgttgacctcaaaaagagaaggaaaaaataataataacatgttgtcatgatattccga 320  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||    
T  14658665 aatatgtgccctttgtttctaacaacactggttggagaaatgtgttgacctcaaaaagagaaggaaaaaataataataacatgctgtcatgaaattctga 14658566  T
Q  321 ccatggtgggagttctagaaaaatca 346  Q
    ||| ||||| | ||||||||||||||    
T  14658565 ccacggtggaaattctagaaaaatca 14658540  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 526 - 605
Target Start/End: Complemental strand, 14662476 - 14662397
Alignment:
Q  526 gaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggac 605  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  14662476 gaacataagatctgcacgaaatctactcttaagcactagtcattattacctagcaacaatagacatcattacctagggac 14662397  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 349 - 442
Target Start/End: Complemental strand, 45336708 - 45336618
Alignment:
Q  349 gttttcttgctggttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgatacca 442  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  45336708 gttttcttgctggttttctctcaccctcaaagttttacactagttttctaacctcacaga-cccgttaagatca--atggggctcttgatacca 45336618  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 362 - 445
Target Start/End: Complemental strand, 14662731 - 14662651
Alignment:
Q  362 ttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgataccatgt 445  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||    
T  14662731 ttttctctcaccctcaaaattttacactgattttctaacctcataga-cccgttaagatcaata--gggctcttgataccatgt 14662651  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 45336403 - 45336329
Alignment:
Q  527 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagg 602  Q
    |||||||||||||||| |||||||||| ||| |||  ||||| ||||||||  ||| ||||| |||||||||||||    
T  45336403 aacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagatatcattacctagg 45336329  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 45338715 - 45338641
Alignment:
Q  527 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagg 602  Q
    |||||||||||||||| |||||||||| ||| |||  ||||| ||||||||  ||| ||||| |||||||||||||    
T  45338715 aacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagatatcattacctagg 45338641  T

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Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 349 - 442
Target Start/End: Complemental strand, 32798455 - 32798365
Alignment:
Q  349 gttttcttgctggttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgatacca 442  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  32798455 gttttcttgctggttttctctcaccctcaaagttttacactagttttctaacctcacaga-cccgttaagatca--atggggctcttgatacca 32798365  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 32798150 - 32798076
Alignment:
Q  527 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagg 602  Q
    |||||||||||||||| |||||||||| ||| |||  ||||| ||||||||  ||| ||||| |||||||||||||    
T  32798150 aacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagatatcattacctagg 32798076  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 32800462 - 32800388
Alignment:
Q  527 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagg 602  Q
    |||||||||||||||| |||||||||| ||| |||  ||||| ||||||||  ||| ||||| |||||||||||||    
T  32800462 aacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagatatcattacctagg 32800388  T

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Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 349 - 442
Target Start/End: Complemental strand, 44732292 - 44732202
Alignment:
Q  349 gttttcttgctggttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgatacca 442  Q
    ||||||||||||||||||||||||||||||| || || ||| |||||||| ||||||||| |||||||||||||  ||||||||||||||||||    
T  44732292 gttttcttgctggttttctctcaccctcaaagttctatactagttttctaccctcacaga-cccgttaagatca--atggggctcttgatacca 44732202  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 44734296 - 44734222
Alignment:
Q  527 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagg 602  Q
    |||||||||||||||| |||||||||| ||| |||  ||||| ||||||||  ||| |||||||||||||||||||    
T  44734296 aacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagacatcattacctagg 44734222  T

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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 524 - 605
Target Start/End: Original strand, 48027288 - 48027369
Alignment:
Q  524 aggaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggac 605  Q
    ||||||||||||||| ||| ||||||||||||||||||  ||||| ||||||||  ||||||||||||||||||||||||||    
T  48027288 aggaacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattacctagggac 48027369  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 524 - 596
Target Start/End: Original strand, 48025108 - 48025180
Alignment:
Q  524 aggaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcatta 596  Q
    ||||||||||||||| ||| ||||||||||||||||||  ||||| ||||||||  |||||||||||||||||    
T  48025108 aggaacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcatta 48025180  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 524 - 605
Target Start/End: Original strand, 48024548 - 48024629
Alignment:
Q  524 aggaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggac 605  Q
    ||||||||||||||| ||| ||||||||| ||||||||  ||||| ||||||||  ||||||| |||||||||||| |||||    
T  48024548 aggaacataaaatctacactaaatctactattaagcactagtcatcattacctaagaacaataaacatcattaccttgggac 48024629  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 526 - 605
Target Start/End: Original strand, 48023999 - 48024078
Alignment:
Q  526 gaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggac 605  Q
    ||||||||||||||||| ||||||||||||||||||  ||||| ||||||||    || ||||||||||||||| |||||    
T  48023999 gaacataaaatctgcactaaatctactcttaagcactagtcatcattacctaagttcattagacatcattaccttgggac 48024078  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 527 - 602
Target Start/End: Original strand, 5354612 - 5354686
Alignment:
Q  527 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagg 602  Q
    |||||||||||||||| |||||||||| ||| |||  ||||||||||||||  ||| ||| |||||||||||||||    
T  5354612 aacataaaatctgcactaaatctactc-taaacactagtcattattacctaagaaccataaacatcattacctagg 5354686  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 28784657 - 28784583
Alignment:
Q  527 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagg 602  Q
    |||||||||||||||| |||||||||| ||| |||  ||||| ||||||||  ||| |||||||||||||||||||    
T  28784657 aacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagacatcattacctagg 28784583  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 602
Target Start/End: Original strand, 48707695 - 48707769
Alignment:
Q  527 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagg 602  Q
    |||||||||||| ||| ||||||||| |||| |||  ||||| ||||||||  ||| |||||||||||||||||||    
T  48707695 aacataaaatctacactaaatctact-ttaaacactagtcatcattacctaaaaaccatagacatcattacctagg 48707769  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 529 - 605
Target Start/End: Original strand, 13111118 - 13111194
Alignment:
Q  529 cataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggac 605  Q
    |||||||| ||||| ||||||||||||||||||  ||||| ||||||||  |||||||||||| |||||||||||||    
T  13111118 cataaaatttgcactaaatctactcttaagcactagtcatcattacctaagaacaatagacattattacctagggac 13111194  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 13110845 - 13110939
Alignment:
Q  349 gttttcttgctggttttctctcaccctcaaa-attttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgataccatgt 445  Q
    ||||||||||||||||||||||||||| |||  ||||||||| ||||||||| ||||||||  | |||||||||||||  || |||||||||||||||    
T  13110845 gttttcttgctggttttctctcaccctaaaattttttacactagttttctaatctcacaga-tcagttaagatcaata--ggactcttgataccatgt 13110939  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 526 - 605
Target Start/End: Original strand, 7230963 - 7231041
Alignment:
Q  526 gaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagggac 605  Q
    ||||||||||||||||| |||||| |||| || |||  ||||| ||||||||| ||| ||||||||||||||||| ||||    
T  7230963 gaacataaaatctgcactaaatctgctctaaa-cactagtcatcattacctaggaaccatagacatcattacctacggac 7231041  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 22804755 - 22804681
Alignment:
Q  527 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagg 602  Q
    |||||||||||||||  ||||||||||| || |||  ||||| ||||||||  ||| |||||||||||||||||||    
T  22804755 aacataaaatctgcattaaatctactctaaa-cactagtcatcattacctaagaaccatagacatcattacctagg 22804681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 1550300 - 1550226
Alignment:
Q  527 aacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagacatcattacctagg 602  Q
    |||||||||||||||| |||||||||| ||| |||  ||||| ||||||||  ||| ||||| |||||||||||||    
T  1550300 aacataaaatctgcactaaatctactc-taaacactagtcatcattacctaagaaccatagatatcattacctagg 1550226  T

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