View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3680_low_6 (Length: 488)
Name: NF3680_low_6
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 39 - 470
Target Start/End: Complemental strand, 47121556 - 47121121
Alignment:
| Q |
39 |
taatatctaccatacaatttatttatttatttatttctcttgggacacttgttaagttgttaacactattcacatgagattccccacattatttgttcat |
138 |
Q |
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| T |
47121556 |
taatatctaccatacaatttatttatttatttatttctcttgagacacttgttaagttgttaacactattcacatgagattccccacattatttgttcat |
47121457 |
T |
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| Q |
139 |
tgtctttttgtgcttattggtggagtgtgattgggtaattgggtatgtacaaacacatccaacaaggtcagttttcaagctccaacagcagtatatgcgc |
238 |
Q |
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| T |
47121456 |
tgtctttttgtgcttattggtggagtgttattgggtagttgggtttgtacaaacacatccaacaaggtcagttttcaagctccaacagcagtatatgcgc |
47121357 |
T |
|
| Q |
239 |
ttagcaaagcatccaattcgctgtttgtgcgcgatagcttttgatcataatcatccactctacttccccatatttcaggaatcacttctgcaagtgtaac |
338 |
Q |
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| T |
47121356 |
ttagcaaagcatccaattcgctgtttgtgcgcgatagcttttgatcataatcatccactctacttccccatatttcaggaatcacttctgcaagtgtaac |
47121257 |
T |
|
| Q |
339 |
actgttcacacattccactacatagtcccctacattgtttttcactgtctccccaacctaaataataaataaacaaatctcagttaaataaattagttct |
438 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47121256 |
actattcacacattccactacatagtcccctacattgtttttcactgtctccccaacctaaataataaataaacaaatctcagttaaataaattagttct |
47121157 |
T |
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| Q |
439 |
gtttg----gtataattacaatttgtttgttagaat |
470 |
Q |
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| T |
47121156 |
gtttggtatgtataattacaatttgtttgttagaat |
47121121 |
T |
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