View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3680_low_7 (Length: 469)
Name: NF3680_low_7
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 35029455 - 35029909
Alignment:
| Q |
1 |
acataataacactccaagattaatctatctttaggatccaattcaaataacaccaaaaacttgcttcaagaaatccaaggtgtgtcctgaaattttagag |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35029455 |
acataataacactccaagattaatctatctttaagatccaattcaaataacaccaaaaacttgcttcaagaaatccaaagtgtgtcctgaaattttagag |
35029554 |
T |
|
| Q |
101 |
aaacttggtcattgttcataacaaaactcataaaagcttctagtcctaaacacatggcttcacatcacaatcaccaggcacagttgcaaacaacattaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35029555 |
aaacttggtcattgttcataacaaaactcataaaagcttctagtcctaaacacatggcttcacatcacaatcaccaggcacagttgcaaacaacattaat |
35029654 |
T |
|
| Q |
201 |
agctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccaataagattctaacacaacatgatcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35029655 |
agctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccaataagattctaacacaacatg----- |
35029749 |
T |
|
| Q |
301 |
atcaaaacagccatgttgtgaacatgtgtgcagttaagccggtgatttgggaaggtagggaaagaaaagaacctatgacagacattattattatatgaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35029750 |
atcaaaacagccatgttgtgaacatgtgtgcagttaagccggtgatttgggaaggtagggaaagaaaagaacctatgacagacattattattatatgaat |
35029849 |
T |
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| Q |
401 |
atgatgatgatatagacaaagtgaataatggatgaaagattatggtccaaatagtataat |
460 |
Q |
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| T |
35029850 |
atgatgatgatatagacaaagtgaattatggatgaaagattatggtccaaatagtataat |
35029909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 188 - 393
Target Start/End: Complemental strand, 36860186 - 36859983
Alignment:
| Q |
188 |
aaacaacattaatagctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccaataagattctaac |
287 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36860186 |
aaacaacattaattgctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccgataagattctaac |
36860087 |
T |
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| Q |
288 |
acaacatgatcaaatcaaaacagccatgttgtgaacatgtgtgc-agttaagccggtgatttgggaaggtagggaaagaaaaga--acctatgacagaca |
384 |
Q |
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| T |
36860086 |
acaacatg-----agcaaaacaaccatgttgtgagcatgtgtgcaagttaagcctgtgatttgggaaggtagggaaagaaaagagcacctaggacagaaa |
36859992 |
T |
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| Q |
385 |
ttattatta |
393 |
Q |
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||||||||| |
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| T |
36859991 |
ttattatta |
36859983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 36860338 - 36860251
Alignment:
| Q |
1 |
acataataacactccaagattaatctatctttaggatccaattcaaataaca--ccaaaaacttgcttcaagaaatccaaggtgtgtcctg |
89 |
Q |
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|||||||||||||||||| ||||| ||| ||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||||| |
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| T |
36860338 |
acataataacactccaagcttaatttat---taggatccaattcaaataacaagcttaaaacttacttcaagtaatccaaggtgtgtcctg |
36860251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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