View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3680_low_8 (Length: 451)
Name: NF3680_low_8
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 41449569 - 41449398
Alignment:
| Q |
60 |
ctaattgacaatgtatactaaaattagttccacatcggggagtttgaaaacatttaacaggagaaggagatataaaaagagaagtgtgctgcacaatata |
159 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
41449569 |
ctaattgacaatgtatactaaaattagtcccacatctgggagtttgaaaacatcaaacaggagaaggagacataaaaagagaagtgtgctgcgcaatata |
41449470 |
T |
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| Q |
160 |
tggagtacgctgctacatggactgtgctacaccaccgttgatatagttttcatataattcataaagttcaac |
231 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41449469 |
tggagtacgctgttacatggactgtgctacaccaccgttgatatagttttcatataattcataaagttcaac |
41449398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 57 - 231
Target Start/End: Original strand, 33171821 - 33171995
Alignment:
| Q |
57 |
gccctaattgacaatgtatactaaaattagttccacatcggggagtttgaaaacatttaacaggagaaggagatataaaaagagaagtgtgctgcacaat |
156 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33171821 |
gccctaattgacaatgtatactaaaattagtcccacatcggggagtttgaaagcatctaacaggagaaggagatataaaaagagaagtgtgctgtgcaat |
33171920 |
T |
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| Q |
157 |
atatggagtacgctgctacatggactgtgctacaccaccgttgatatagttttcatataattcataaagttcaac |
231 |
Q |
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||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
33171921 |
atatggagtacgctgctgcatggattgtgctacaccactgttgatatagttttcatataatttataaagttcaac |
33171995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 23236458 - 23236658
Alignment:
| Q |
59 |
cctaattgacaatgtatactaaaattagttccacatcggggagtttgaaaacatttaacaggagaaggagatataaaaagagaagtgtgctgcacaatat |
158 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||| | ||||||||| |||||| |
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| T |
23236458 |
cctaattgacaatgtatactaaaattagtcccacatcggggagttgcaaaacatgtaacagaagaaggagatataaaaagatatgtgtgctgcgcaatat |
23236557 |
T |
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| Q |
159 |
atggagtacgctgctacatggactgtgctacaccaccgttgatatagttttcatataattcataaagttcaacnnnnnnnnctatgaccagcatggtctg |
258 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||||||| ||||||||||||||||||| |
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| T |
23236558 |
atggagtacgctgctacatggactctgctacaccaacgttgatatagttttcatatattttataaagttcaacttttttttctatgaccagcatggtctg |
23236657 |
T |
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| Q |
259 |
t |
259 |
Q |
| |
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| |
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|
| T |
23236658 |
t |
23236658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 57 - 259
Target Start/End: Original strand, 48151413 - 48151615
Alignment:
| Q |
57 |
gccctaattgacaatgtatactaaaattagttccacatcggggagtttgaaaacatttaacaggagaaggagatataaaaagagaagtgtgctgcacaat |
156 |
Q |
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||||| |||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
48151413 |
gccctgattgacaacgtatactaaaattaatcccacatcggggagtttgaaaacatctaacaggagaaggagatataaaatgagaagtgtgctgcgcaat |
48151512 |
T |
|
| Q |
157 |
atatggagtacgctgctacatggactgtgctacaccaccgttgatatagttttcatataattcataaagttcaacnnnnnnnnctatgaccagcatggtc |
256 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
48151513 |
atatgcagtacgctgctacatggactgtgctacaccaccgttgatatagttttcatataatttataaagttcaactttattttctatgaccagcatggtc |
48151612 |
T |
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| Q |
257 |
tgt |
259 |
Q |
| |
|
||| |
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|
| T |
48151613 |
tgt |
48151615 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 57 - 231
Target Start/End: Complemental strand, 14101725 - 14101561
Alignment:
| Q |
57 |
gccctaattgacaatgtatactaaaattagttccacatcggggagtttgaaaacatttaacaggagaaggagatataaaaagagaagtgtgctgcacaat |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||| |
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| T |
14101725 |
gccctaattgacaatgtatactaaaattagtcccacatcggggagtttgaaaacatctaataggagaaggagatataaaaagagaagtgcgctg------ |
14101632 |
T |
|
| Q |
157 |
atatggagtacgctgctacatggactgtgctacaccaccgttgatatagttttcatataattcataaagttcaac |
231 |
Q |
| |
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| ||| || |||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| |
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| T |
14101631 |
agttgg---gagcctctacatggactgtgctacacaaccgttgatatagttttcatataatt-acaaagttcaac |
14101561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 420
Target Start/End: Original strand, 51375404 - 51375544
Alignment:
| Q |
287 |
ttgatatagcttaagctttcaattccattcacagtgtgtgaacaagctgagca---------------atggatatttgtttggttggcaacacatgtaa |
371 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51375404 |
ttgatatagcttaagctttcaattccattcacaatgtgtgaacaagctgagcaatgaagtcccaacacatggatatttgtttggttggcaacacatgtaa |
51375503 |
T |
|
| Q |
372 |
tcatgtgtgctatgtctatgtggtttgcgtttaagctaatgtccaacta |
420 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
51375504 |
tcatgtgtgc--------tgtggtttgcgtttaagctaacgtccaacta |
51375544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 70 - 229
Target Start/End: Original strand, 24844945 - 24845100
Alignment:
| Q |
70 |
atgtatactaaaattagttccacatcggggagtttgaaaacatttaacaggagaaggagatataaaaagagaagtgtgctgcacaatatatggagtacgc |
169 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| || ||| || ||||||| ||| |
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| T |
24844945 |
atgtatactaaaattagtcccacatcggggagtttgaaaacatctaacaggagaagtagatataaaaagagaagtgcgcgttacattagatggagtgcgc |
24845044 |
T |
|
| Q |
170 |
tgctacatggactgtgctacaccaccgttgatatagttttcatataattcataaagttca |
229 |
Q |
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||| ||||||||||||||||| ||||||| ||||| |||||||||| |||||||||| |
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| T |
24845045 |
tgc-acatggactgtgctacattaccgttg--ttagttgtcatataatt-ataaagttca |
24845100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 17066731 - 17066664
Alignment:
| Q |
75 |
tactaaaattagttccacatcggggagtttgaaaacatttaacaggagaaggagatataaaaagagaa |
142 |
Q |
| |
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||||||||||| | |||| | | || |||||||||||||| ||||||| || |||||||||||||||| |
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|
| T |
17066731 |
tactaaaattattcccacgttgaggtgtttgaaaacatttgacaggaggagtagatataaaaagagaa |
17066664 |
T |
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