View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3680_low_9 (Length: 407)
Name: NF3680_low_9
Description: NF3680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3680_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 44559618 - 44560005
Alignment:
| Q |
1 |
tctacaccatcaaaatattcaccttccaattgccatctccataccgaccaaatcagagattatccattttctaatgtcatcgtgaacttgcaccatgcaa |
100 |
Q |
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| T |
44559618 |
tctacaccatcaaaatattcaccttccaattgccatctccatatcgaccaaatcagagactatccattttctcatgtcatcgtgaacttgcaccatgcaa |
44559717 |
T |
|
| Q |
101 |
tcagctaaaataatgttgccacctgtcatttgtgatttgttttctccagacattaactgatcgcacatcaccgactcagaatgactaatactagtccaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44559718 |
tcagctaaaataatgttgccacctgtcatttgtgatttgttttctccaaacattaactgatcgcacatcaccgactcagaatgactaatactagtccaag |
44559817 |
T |
|
| Q |
201 |
tgctaaccattactttgcaaataaataatctgagggtttagcaacaatgcctctcctcaagtatccctcggctatattttcccttcaaaacactgcacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44559818 |
tgctaaccattactttgcaaataaataatctgagggtttagcaacaatgcctctcctcaagtatccctcggctatattttcccttcaaaacactgcacca |
44559917 |
T |
|
| Q |
301 |
caagataaccttaccctcgttcatctcctaacccatcttcattaagcaagcactactcattgtatgaaggcttctaccggggccaagg |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44559918 |
caagataaccttaccctcgttcatctcctaacccatcttcattaagcaagcactactcattgtatgaaggcttctaccggggccaagg |
44560005 |
T |
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