View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3681_high_3 (Length: 364)
Name: NF3681_high_3
Description: NF3681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3681_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 1531379 - 1531031
Alignment:
| Q |
1 |
gcaaagggatatttctccactttgtcaccaaagaaatttgttgtctccccagcaacaaaaaggatgagtgcatagaagagcataaatataatgccagtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1531379 |
gcaaagggatatttctccactttgtcaccaaagaaatttgttgtctccccagcaacaaaaaggatgagtgcatagaagagcataaatataatgccagtga |
1531280 |
T |
|
| Q |
101 |
taagtttaaaccttttgagaccactcacacaagttggaggttcatgcttaaatatagccattggagagagagcaataatccaaatgatagaaacaattaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1531279 |
taagtttaaaccttttgagaccactcacacaagttggaggttcatgcttaaatatagccattggagagagagcaataatccaaatgatagaaacaattaa |
1531180 |
T |
|
| Q |
201 |
agcagtaataggtgatatgataactatcaataaaacacatatacatgcaagcataaaaatttggaaatattcccctagatcaagaggtggagattctaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1531179 |
agcagtaataggtgatatgataactatcaataaaacacatatacatgcaagcataaaaatttggaaatattcccctagatcaagaggtggagattctaag |
1531080 |
T |
|
| Q |
301 |
atg-ttagtgagaataatgatgagaaaagtgataactgtgaaaactaac |
348 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1531079 |
atgtttagtgagaataatgatgagaaaagtgataactgtgaaaactaac |
1531031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 1529835 - 1529784
Alignment:
| Q |
297 |
taagatgttagtgagaataatgatgagaaaagtgataactgtgaaaactaac |
348 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
1529835 |
taagatggtagtgagaataacgatgagaaaagtaataacagtgaaaactaac |
1529784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 1526654 - 1526620
Alignment:
| Q |
314 |
taatgatgagaaaagtgataactgtgaaaactaac |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1526654 |
taatgatgagaaaagtgataactgtgaaaactaac |
1526620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 23084370 - 23084404
Alignment:
| Q |
313 |
ataatgatgagaaaagtgataactgtgaaaactaa |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
23084370 |
ataatgatgagaaaagtgataactgtgaaaactaa |
23084404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 1530060 - 1530015
Alignment:
| Q |
151 |
aatatagccattggagagagagcaataatccaaatgatagaaacaa |
196 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||| |||||| |
|
|
| T |
1530060 |
aatatagccattgcggagagagcaataacccaaatgataaaaacaa |
1530015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University