View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3681_high_4 (Length: 357)
Name: NF3681_high_4
Description: NF3681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3681_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 52721631 - 52721303
Alignment:
| Q |
16 |
atcagagtgtgtggtctcaacctcatagagagtaggttcattttctaccgaaactccttttcgatgtttcttgacggaggctacaataacctgaagaaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52721631 |
atcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataacctgaagaaac |
52721532 |
T |
|
| Q |
116 |
ctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtgggtattccaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52721531 |
ctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtgggtattccaa |
52721432 |
T |
|
| Q |
216 |
caccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaaagc |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52721431 |
aaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaagaaaaaccaattaaagaaagc |
52721332 |
T |
|
| Q |
316 |
gtatttcttttggacttctttttcatctc |
344 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
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| T |
52721331 |
gtatttctgttggacttctttttcatctc |
52721303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 52712810 - 52712482
Alignment:
| Q |
16 |
atcagagtgtgtggtctcaacctcatagagagtaggttcattttctaccgaaactccttttcgatgtttcttgacggaggctacaataacctgaagaaac |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
52712810 |
atcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaagaaac |
52712711 |
T |
|
| Q |
116 |
ctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtgggtattccaa |
215 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| ||||||| |
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| T |
52712710 |
ctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtgggaattccaa |
52712611 |
T |
|
| Q |
216 |
caccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaaagc |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712610 |
aaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaaagc |
52712511 |
T |
|
| Q |
316 |
gtatttcttttggacttctttttcatctc |
344 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
52712510 |
gtatttcttttggacttctttttcatctc |
52712482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 52698991 - 52698663
Alignment:
| Q |
16 |
atcagagtgtgtggtctcaacctcatagagagtaggttcattttctaccgaaactccttttcgatgtttcttgacggaggctacaataacctgaagaaac |
115 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| || |||||||||||| || |||||| |||||||||||| | || ||||||||||||||||||||| |
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| T |
52698991 |
atcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaagaaac |
52698892 |
T |
|
| Q |
116 |
ctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtgggtattccaa |
215 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||| |||||| ||| |||| | || | | ||||||||||| || | ||||||||||||||| | ||| |
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| T |
52698891 |
ctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatgcaa |
52698792 |
T |
|
| Q |
216 |
caccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaaagc |
315 |
Q |
| |
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|||||||| |||||||| || | |||| ||||||||||| || ||||||||||| |||||||||||||| |||||| |||||||||||||||||| |
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| T |
52698791 |
aaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaaaga |
52698692 |
T |
|
| Q |
316 |
gtatttcttttggacttctttttcatctc |
344 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |
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|
| T |
52698691 |
gaatttcatttggacttctttttcatctc |
52698663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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