View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3681_high_5 (Length: 250)
Name: NF3681_high_5
Description: NF3681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3681_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 26803066 - 26803302
Alignment:
| Q |
14 |
gaaaagaatgatgaaaagggcacatttttatttacctgtaaaatttggttagcattatcaacaactcctctaactttacttatatcaatgccatattctg |
113 |
Q |
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| T |
26803066 |
gaaaagaatgatgaaaagggcacatttttatttacctgtaaaatttggttagcattatcaacaactcctctaactttacttatatcaatgccatattctg |
26803165 |
T |
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| Q |
114 |
aactaatagacatcatttgcttatcagtcaaattggccacaatttctgcatcaaattctgaaaatgcagccctgcacataaatttaaaattagtacttcc |
213 |
Q |
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| T |
26803166 |
aactaatagacatcatttgcttatcagtcaaattggccacaatttctgcatcaaattctgaaaatgcagccctgcacataaatttaaaattagtacttcc |
26803265 |
T |
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| Q |
214 |
ctagagcaaaaatattattgtatgttctgcaattaac |
250 |
Q |
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| T |
26803266 |
ctagagcaaaaatattattgtatgttctgcaattaac |
26803302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 30343352 - 30343517
Alignment:
| Q |
61 |
gttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagacatcatttgcttatcagtcaaattggccacaatttct |
160 |
Q |
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| T |
30343352 |
gttagcattatcaacaactcctctaacttttcttatgtcaatgctatattctgaactaatagacatcatttgcttatcagtcaaattggccacaatttct |
30343451 |
T |
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| Q |
161 |
gcatcaaattctgaaaatgcagccctgcacataaatttaaaattag-tacttccctagagcaaaaa |
225 |
Q |
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| T |
30343452 |
gcatcaaattctgaaaatgcatctctgcacataaatttaaagttagttacttccctagagcaaaaa |
30343517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 18416377 - 18416520
Alignment:
| Q |
44 |
tttacctgtaaaatttggttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagacatcatttgcttatcagtca |
143 |
Q |
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| T |
18416377 |
tttacctctaaaattcgattagcattatcaacaactcctcgaactctgcttatatcaatcccatattccaaactaatagacaacatttgtttatcagtta |
18416476 |
T |
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| Q |
144 |
aattggccacaatttctgcatcaaattctgaaaatgcagccctg |
187 |
Q |
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| T |
18416477 |
agttggccaatgttgctgcatgaaattctgaaaatgcagtcctg |
18416520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 61 - 222
Target Start/End: Complemental strand, 18986427 - 18986265
Alignment:
| Q |
61 |
gttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagacatcatttgcttatcagtcaaattggccacaatttct |
160 |
Q |
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| T |
18986427 |
gttagcattatcaacaactcctctaacttttcttatgtcaatgctatattctgaactaatagacatcatttgcttatcaatcaaattggccacaatttct |
18986328 |
T |
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| Q |
161 |
gcatcaaattctgaaaatgcagccctgcacataaatttaaaattag-tacttccctagagcaa |
222 |
Q |
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| T |
18986327 |
gcatcaaattctgaaaatgcagctctgcacataaatttaaagttagttacttacctagagcaa |
18986265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 23919090 - 23919252
Alignment:
| Q |
61 |
gttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagacatcatttgcttatcagtcaaattggccacaatttct |
160 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23919090 |
gttagcattatcaacaactcctctaacttttcttatgtcaatgctatattctgaactaatagacatcatttgcttatcaatcaaattggccacaatttct |
23919189 |
T |
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| Q |
161 |
gcatcaaattctgaaaatgcagccctgcacataaatttaaaattag-tacttccctagagcaa |
222 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||||||| |
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| T |
23919190 |
gcatcaaattctgaaaatgcagctctgcacataaatttaaagttagttacttacctagagcaa |
23919252 |
T |
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