View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3682_high_3 (Length: 269)

Name: NF3682_high_3
Description: NF3682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3682_high_3
NF3682_high_3
[»] chr7 (11 HSPs)
chr7 (16-265)||(7878572-7878821)
chr7 (16-261)||(8589718-8589963)
chr7 (46-237)||(8383746-8383937)
chr7 (58-237)||(8601093-8601272)
chr7 (16-259)||(8544713-8544956)
chr7 (54-261)||(8609035-8609242)
chr7 (45-261)||(8580806-8581022)
chr7 (138-260)||(8569513-8569635)
chr7 (68-261)||(29578518-29578711)
chr7 (39-265)||(8575402-8575628)
chr7 (138-261)||(29582687-29582810)
[»] chr8 (1 HSPs)
chr8 (105-262)||(12527673-12527830)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 7878821 - 7878572
Alignment:
Q  16 cagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcatt 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878821 cagaattgatttccaatttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcatt 7878722  T
Q  116 cactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878721 cactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattt 7878622  T
Q  216 tcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878621 tcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgc 7878572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 8589718 - 8589963
Alignment:
Q  16 cagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcatt 115  Q
    |||||||||||  |||||| ||||||| ||| ||||| ||||  || || |||||||||||||||||||||||    ||||  ||||| || ||||||||    
T  8589718 cagaattgattctcactttgtcaacagaagtaagcttggaagctacactgtcatccttcattactttcctcatgtcgtaaagataatcatctaaagcatt 8589817  T
Q  116 cactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattt 215  Q
    || ||||||||| |||| || |  |||||||||||||| |||||||| ||||||||| |  ||| |||||||||||||||| ||||  ||||||||||||    
T  8589818 cattgctctaactttcttcacatgcttcatgtcttcagccttgaagtgctcagcttcctggatcattctctcaatttcttcgcttgtcagtcttccattt 8589917  T
Q  216 tcattcgtaattgtaatttctttcttgttaccacttgtttcttcct 261  Q
    ||||| || |||||||| | ||| || ||||||||  |||||||||    
T  8589918 tcattggttattgtaatattttttttattaccactgctttcttcct 8589963  T

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Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 8383937 - 8383746
Alignment:
Q  46 tgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcat 145  Q
    ||||| |||||||||| |||||||| |||||||||||||||||  | ||||  ||||| ||||||||||||| |||| |||| |||| ||||||||||||    
T  8383937 tgagcattgaagtaacactatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcat 8383838  T
Q  146 gtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 237  Q
    |||||||| |||||| | ||| || ||||  ||| ||||||||||||| ||  ||||||  ||||||||||||||| | |||||||| ||||    
T  8383837 gtcttcagccttgaaattctctgcctcttggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatctt 8383746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 237
Target Start/End: Original strand, 8601093 - 8601272
Alignment:
Q  58 taacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagactt 157  Q
    |||| |||||||||||||||||||| |||||  | ||||  ||||| |||| | |||||| |||| |||| |||| | | |||||||||||||||   ||    
T  8601093 taacactatcatccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaacttcatgtcttcatcttt 8601192  T
Q  158 gaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 237  Q
    ||| | |||||||||||  ||| ||||||||||||||||  ||||||||||||| ||||||||||| |||||||||||||    
T  8601193 gaaattctcagcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgtaatttctt 8601272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 8544713 - 8544956
Alignment:
Q  16 cagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcatt 115  Q
    |||||||||| | || ||| || ||||| | |||||| ||| |||| | |||||||||||||||||||||||   | ||||  |||| ||||||||||||    
T  8544713 cagaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactttcctcacattgtaaagataatactccaaagcatt 8544812  T
Q  116 cactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattt 215  Q
       ||||  ||| || |   | ||||||||||||| || |||||| |  |||||||| |  ||| |||||||||||||||||||||||| ||||||||||    
T  8544813 tcttgcttcaactttttttctgaacttcatgtcttgagccttgaaattgtcagcttcctggatcattctctcaatttcttcccttgataatcttccattt 8544912  T
Q  216 tcattcgtaattgtaatttctttcttgttaccacttgtttcttc 259  Q
    ||| | || ||||||||||| |||||  ||||||| ||||||||    
T  8544913 tcaatagttattgtaatttcattcttactaccactggtttcttc 8544956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 261
Target Start/End: Original strand, 8609035 - 8609242
Alignment:
Q  54 gaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcag 153  Q
    |||||||| ||  |||||||||||||||||| |||  | |||| |||||| |||||| |||||| |||| |||| ||||   ||||||||| ||||||      
T  8609035 gaagtaacactcccatccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcct 8609134  T
Q  154 acttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgt 253  Q
      ||||| | ||||||||||| |||| ||||||||||||||||  |||| ||||  |||||||| || || || ||||| |||||||| |||||||| ||    
T  8609135 ctttgaaattctcagcttcttgaatcattctctcaatttcttcagttgaaagtcgaccattttcctttgttatagtaatatctttcttattaccactggt 8609234  T
Q  254 ttcttcct 261  Q
    ||||||||    
T  8609235 ttcttcct 8609242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 261
Target Start/End: Original strand, 8580806 - 8581022
Alignment:
Q  45 gtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttca 144  Q
    |||||||||||| |||| | || ||||| |||||||||||||| | | ||||  ||||| ||||||||||| | |||| |||| |||| | | |||| ||    
T  8580806 gtgagctttgaactaacacaattatcctccattactttcctcactttgtaaagataatcgtccaaagcatttattgctttaactttcttcttgaactcca 8580905  T
Q  145 tgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgtt 244  Q
    |||||| || ||| ||    ||||||| |  |||| || |||||||||| || ||||| |||||||||||||||||||| ||||||||  | |||||  |    
T  8580906 tgtcttgagccttaaaaatttcagcttgtaaaatcattttctcaatttcctctcttgaaagtcttccattttcattcgttattgtaatagccttcttact 8581005  T
Q  245 accacttgtttcttcct 261  Q
    | || ||||||||||||    
T  8581006 agcatttgtttcttcct 8581022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 260
Target Start/End: Original strand, 8569513 - 8569635
Alignment:
Q  138 aacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 237  Q
    ||||||||||||| || |||||| | ||||||||| |  ||| |||||||||||| | ||||||||| |||||| || ||||| || ||||||||||| |    
T  8569513 aacttcatgtcttgagccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttctcattagttattgtaatttcat 8569612  T
Q  238 tcttgttaccacttgtttcttcc 260  Q
    | || || ||||| |||||||||    
T  8569613 ttttattgccactggtttcttcc 8569635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 29578711 - 29578518
Alignment:
Q  68 atccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactca 167  Q
    ||||| ||||||||| ||| || | ||||  ||||| ||||||||||| || |||||| | |||||   ||||||||| ||||||  |||||| | ||||    
T  29578711 atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctca 29578612  T
Q  168 gcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcct 261  Q
    |||||||  ||| ||| |||||||||||   |||| ||||||| ||| ||||| || ||||| || ||  |||| || ||| ||||||||||||    
T  29578611 gcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcct 29578518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 265
Target Start/End: Original strand, 8575402 - 8575628
Alignment:
Q  39 acaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataa 138  Q
    ||||| ||||||||||||  ||| | |||||||||||||| |||||||    | | ||  ||||| ||||| ||||| | |||| |||| |||| | | |    
T  8575402 acaggggtgagctttgaaccaacaccatcatccttcattaatttcctcgcattgtgaagataatcgtccaatgcatttattgctgtaactttcttcttga 8575501  T
Q  139 acttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttcttt 238  Q
    ||| |||||||| || ||||||    |||||||||| |||| ||||| |||||||||   | |||||||| |  | || |||||| |||| |||  ||||    
T  8575502 actccatgtcttgagccttgaaaatttcagcttcttgaatcattctcgcaatttcttgagtcgatagtctacagtattgattcgtcattgcaataccttt 8575601  T
Q  239 cttgttaccacttgtttcttcctttgc 265  Q
    ||| | |||||||||||||||||||||    
T  8575602 cttataaccacttgtttcttcctttgc 8575628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 261
Target Start/End: Complemental strand, 29582810 - 29582687
Alignment:
Q  138 aacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 237  Q
    |||||||  ||||||  |||||| | ||| |||||||  ||| ||||||||||||||||  |||| | |||||||||| |||| || |||||||| ||||    
T  29582810 aacttcagatcttcaaccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctctt 29582711  T
Q  238 tcttgttaccacttgtttcttcct 261  Q
    | || || ||| | ||||||||||    
T  29582710 ttttatttccagtggtttcttcct 29582687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 262
Target Start/End: Original strand, 12527673 - 12527830
Alignment:
Q  105 tccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgata 204  Q
    ||||||||||| | |||| |||| ||||   | |||||||| ||||||| |||||| | ||||||||| |  ||| ||||| |||||||||| |||||||    
T  12527673 tccaaagcattgattgctttaactttctttttgaacttcatatcttcagccttgaaattctcagcttcctggatcattctcccaatttcttcacttgata 12527772  T
Q  205 gtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctt 262  Q
     ||||||||||||||| || |||||||| |||||||| |||||||| |||| ||||||    
T  12527773 atcttccattttcatttgttattgtaatatctttcttattaccactggttttttcctt 12527830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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