View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3682_high_4 (Length: 257)
Name: NF3682_high_4
Description: NF3682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3682_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 25888011 - 25887783
Alignment:
| Q |
19 |
tacaatgctggacaagctcaagggatgacgttttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25888011 |
tacaatgctggacaagctcaagggatgacgttttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaag |
25887912 |
T |
|
| Q |
119 |
atcctttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggggattcctttgaaggtgggaaactgattggaggtcgtcttaaagcttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25887911 |
atcctttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggtgattcctttgaaggtgggaaactgattggaggtcgtcttaaagcttc |
25887812 |
T |
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| Q |
219 |
tgcttgttgcaaacactttactgcctatg |
247 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
25887811 |
tgcttgttgcaaacactttactgcctatg |
25887783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 25910619 - 25910390
Alignment:
| Q |
18 |
atacaatgctggacaagctcaagggatgacgttttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaa |
117 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25910619 |
atacaatgctggacaagcccaagggatgaatttttgggcaccaaacataaacatattcagggacccaagatggggaagaggacaagaaacagctggtgaa |
25910520 |
T |
|
| Q |
118 |
gatcctttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggggattcctttgaaggtgggaaactgattggaggtcgtcttaaagctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25910519 |
gatcctttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggtgattcctttgaaggtgggaaactgattggaggtcgtcttaaagctt |
25910420 |
T |
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| Q |
218 |
ctgcttgttgcaaacactttactgcctatg |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
25910419 |
ctgcttgttgcaaacactttactgcctatg |
25910390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 25928457 - 25928229
Alignment:
| Q |
19 |
tacaatgctggacaagctcaagggatgacgttttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25928457 |
tacaatgctggacaagctcaagggatgacgttttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaag |
25928358 |
T |
|
| Q |
119 |
atcctttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggggattcctttgaaggtgggaaactgattggaggtcgtcttaaagcttc |
218 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
25928357 |
atcctttggtgaattcaaagtatggtgtttcctatgtaagaggacttcaaggagattcctttgaaggtggaaaactgattggagatcgtcttaaagcttc |
25928258 |
T |
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| Q |
219 |
tgcttgttgcaaacactttactgcctatg |
247 |
Q |
| |
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||||||||||||||| ||||||||||||| |
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| T |
25928257 |
tgcttgttgcaaacattttactgcctatg |
25928229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 25957164 - 25957392
Alignment:
| Q |
19 |
tacaatgctggacaagctcaagggatgacgttttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaag |
118 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
25957164 |
tacaatgctggacaagcagaggggatgacattttgggcaccaaacataaacatatttagggacccaagatggggaagagggcaagagacagctggtgaag |
25957263 |
T |
|
| Q |
119 |
atcctttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggggattcctttgaaggtgggaaactgattggaggtcgtcttaaagcttc |
218 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||| ||||||||| |||||||| ||||||||||||||||||||||| | || || ||||||||||||||| |
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| T |
25957264 |
atcctttggtaagtgcaaagtatgctgtttcctttgtgagaggtcttcaaggtgattcctttgaaggtgggaaacttaatgaagatcgtcttaaagcttc |
25957363 |
T |
|
| Q |
219 |
tgcttgttgcaaacactttactgcctatg |
247 |
Q |
| |
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||||||||| ||||||||||||||||||| |
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| T |
25957364 |
tgcttgttgtaaacactttactgcctatg |
25957392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 40 - 247
Target Start/End: Complemental strand, 33423731 - 33423527
Alignment:
| Q |
40 |
gggatgacgttttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatcctttggtaaattcaaagt |
139 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| || | | ||| || | |
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| T |
33423731 |
gggatgacattttgggcaccaaacataaacatattcagggatccaagatgggggagaggacaagaaacagctggtgaagatcctatgatgacttctaact |
33423632 |
T |
|
| Q |
140 |
atggtgtttcctatgtgagaggacttcaaggggattcctttgaaggtgggaaactgattggaggtcgtcttaaagcttctgcttgttgcaaacactttac |
239 |
Q |
| |
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||| |||||||||||| |||||||||||||| ||||| ||| |||| || ||| ||| | || | ||| |||||||||||||||||||||| || || |
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| T |
33423631 |
atgctgtttcctatgttagaggacttcaaggtgattcttttcaaggaggtaaattga---ggggacaccttcaagcttctgcttgttgcaaacatttcac |
33423535 |
T |
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| Q |
240 |
tgcctatg |
247 |
Q |
| |
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|||||||| |
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| T |
33423534 |
tgcctatg |
33423527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 37610214 - 37610288
Alignment:
| Q |
51 |
ttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatccttt |
125 |
Q |
| |
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|||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||| | || ||||| ||||| |
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| T |
37610214 |
ttggtcaccaaacattaacatatttagggatccaagatggggaagaggtcaagaaacaccaggagaagacccttt |
37610288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 1370267 - 1370192
Alignment:
| Q |
51 |
ttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatcctttg |
126 |
Q |
| |
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|||| |||||||||| |||||||| || || |||||||||||||| |||||||||||| | |||||||| |||||| |
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| T |
1370267 |
ttggtcaccaaacattaacatattcagagatccaagatggggaaggggacaagaaacaccaggtgaagaccctttg |
1370192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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