View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3682_low_1 (Length: 688)
Name: NF3682_low_1
Description: NF3682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3682_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 272 - 679
Target Start/End: Original strand, 33379707 - 33380114
Alignment:
| Q |
272 |
gcatgccatcaatttatccttgtttggatatatcatatgctacaaatttgtggcaaccactttagacccagctgcaaccacaacttgtttctttgatacc |
371 |
Q |
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| T |
33379707 |
gcatgccatcaatttatccttgtttggatatatcatatgctacaaatttgtggcaaccactttagacccagctgcaaccacaacttgtttctttgatacc |
33379806 |
T |
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| Q |
372 |
acagaacacttatctttcttctcatcttgattcatctgctgttgacgacactctagactgcagaaagcactatctcctctgcaaatttaatttttcataa |
471 |
Q |
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| T |
33379807 |
acagaacacttatctttcttctcatcttgattcatctgctgttgacgacactctagactgcagaaagcactatctcctctgcaaatttaatttttcataa |
33379906 |
T |
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| Q |
472 |
attagttccaattatcacacactcttctatatccacacaaaattaataatnnnnnnncttagtatgtataattaataaaaaatagtcttgtgaacacatc |
571 |
Q |
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| T |
33379907 |
attaattccaattatcacacacccttctatatccacacaaaattaataataaaaaaacttagtatgtataattaataaaaaatagtcttgtgaacacatc |
33380006 |
T |
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| Q |
572 |
tcatatcgtaaaatgttgcagagacatttgatacgttagggcacaggtttgaacttgcgtctggtatcaaacttagtatgtataagtttcaaccaagact |
671 |
Q |
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| T |
33380007 |
tcatatagtaaaatgttgcagagacatttgatacgttagggcacaggtttgaacttgcgtctggtatcaaacttagtatgtataagtttcaaccaagact |
33380106 |
T |
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| Q |
672 |
tttagatg |
679 |
Q |
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| T |
33380107 |
tttagatg |
33380114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 33379463 - 33379635
Alignment:
| Q |
30 |
acacattatgatgactcaaaatccaagggaaaatacaacagttgcttcaaaattactggcctaataagaatcaaagaagtggataaaccactgtagccaa |
129 |
Q |
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| T |
33379463 |
acacattatgatgactcaaaatccaagggaaaatacaacagttgcttcaaaattactggcctaataagaatcaaagaagtggat-aaccactgtagccaa |
33379561 |
T |
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| Q |
130 |
gataaaaattacaaagccagaaccaaaag-nnnnnnnnntccaagagttcatagagaaaaaagagggagctagg |
202 |
Q |
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| T |
33379562 |
gataaaaattacaaagccagaaccaaaagaaaaaaaaaatccaagagttcatagagaaaaaagagggagctagg |
33379635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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