View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3682_low_2 (Length: 293)
Name: NF3682_low_2
Description: NF3682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3682_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 27228629 - 27228356
Alignment:
| Q |
1 |
cagagaattgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacgacggtttatcagat |
100 |
Q |
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| T |
27228629 |
cagagagttgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgaagacggtttatcagat |
27228530 |
T |
|
| Q |
101 |
gatgatcccattagaacaagccttactacctactcaccacacctcgagctcgttgggaaaaagtttctttctcaaatgatcaagaatcatgctgctgatg |
200 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27228529 |
gatgatcccattagagcaagccttactacctacttaccacacctcgagctcgttgggaaaaagtttctttctcaaatgatcaagaatcatgctgctgatg |
27228430 |
T |
|
| Q |
201 |
agtcaaatacaccgatttcttgtattgtaaacaatccttttcttccttgggtttgtgatgtagctgctgcactc |
274 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||| |
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| T |
27228429 |
agtcaaatacactgatttcttgtatcataaacaatccttttcttccatgggttagtgatgtagctgctgaactc |
27228356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 4 - 266
Target Start/End: Complemental strand, 27224423 - 27224173
Alignment:
| Q |
4 |
agaattgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacgacggtttatcagatgat |
103 |
Q |
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||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |
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| T |
27224423 |
agaattgagaactgttaacaatatcactgaaaaattagtcattccagttggtaatggttctctcacatttcagttctttgatgacggtttatcagatgat |
27224324 |
T |
|
| Q |
104 |
gatcccattagaacaagccttactacctactcaccacacctcgagctcgttgggaaaaagtttctttctcaaatgatcaagaatcatgctgctgatgagt |
203 |
Q |
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| T |
27224323 |
gatcccattagaacaagtcaaactacctacttaccacacctcgagcttgttgggaaacagtttctttctcaaatgatcaaga------------atgagt |
27224236 |
T |
|
| Q |
204 |
caaatacaccgatttcttgtattgtaaacaatccttttcttccttgggtttgtgatgtagctg |
266 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
27224235 |
caaatacaccgatttcttgtatcataaacaatccttttcttccatgggtttgtgatgtagctg |
27224173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 19665247 - 19665493
Alignment:
| Q |
13 |
aactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacgacggtttatcagatgatgatcccatt |
112 |
Q |
| |
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||||||||||||||||| | | |||||| ||| |||| | ||| ||||||||||| ||| | |||||||| || |||||| |||||||||||||||| |
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| T |
19665247 |
aactgttaacaacatcactcacaaatcactcactccaataggtgatggttctctcattttccacttctttgatgatggtttagaagatgatgatcccatt |
19665346 |
T |
|
| Q |
113 |
agaacaagccttactacctactcaccacacctcgagctcgttgggaaaaagtttctttctcaaatgatcaagaatcatgctgctgatgagtcaaatacac |
212 |
Q |
| |
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||| |||| ||| | |||||| |||| || ||||| ||||||| ||||||||||||||||||||| |||||||| | |||||||||| | || |
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| T |
19665347 |
agagcaagtcttggtggatactcaacacagcttgagcttgttgggacaaagtttctttctcaaatgattaagaatca------taatgagtcaaacaaac |
19665440 |
T |
|
| Q |
213 |
cgatttcttgtattgtaaacaatccttttcttccttgggtttgtgatgtagct |
265 |
Q |
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| T |
19665441 |
ctatttcttgcatcataaacaatccttttcttccatgggtttgtgatgtagct |
19665493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 48653566 - 48653317
Alignment:
| Q |
11 |
agaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacgacggtttatcagatgatgatccca |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| |||| ||||| ||||||| ||| | || ||||||||||| || ||||| |||||||||||| | |
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| T |
48653566 |
agaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgatgattgtttagaagatgatgatccta |
48653467 |
T |
|
| Q |
111 |
ttagaacaagccttactacctactcaccacacctcgagctcgttgggaaaaagtttctttctcaaatgatcaagaatcatgctgctgatgagtcaaatac |
210 |
Q |
| |
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||||| | ||||| |||| | |||| ||| | || ||||| ||| ||| ||||||||||||||||||||||||| ||||||||| | |
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| T |
48653466 |
ttagaggagatattactggctacatagcacagctcaaacttgttggaaaaccctttgtttctcaaatgatcaagaatcatgc------tgagtcaaacaa |
48653373 |
T |
|
| Q |
211 |
accgatttcttgtattgtaaacaatccttttcttccttgggtttgtgatgtagctg |
266 |
Q |
| |
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||| ||||| ||| | |||| ||||| |||||||||||||||||||||||||||| |
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| T |
48653372 |
accaatttcatgtctcataaataatccctttcttccttgggtttgtgatgtagctg |
48653317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 11547671 - 11547429
Alignment:
| Q |
17 |
gttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacgacggtttatcagatgatgatcccattagaa |
116 |
Q |
| |
|
|||||||||||| |||| |||||||||| || | ||||||||||||||| | || ||||||||||| || |||||| |||||||||||| ||||| |
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| T |
11547671 |
gttaacaacatcgttgaaaaatcagtcacatcaataggtaatggttctctcacttttgagttctttgatgatggtttacaagatgatgatcctattaggg |
11547572 |
T |
|
| Q |
117 |
caagccttactacctactcaccacacctcgagctcgttgggaaaaagtttctttctcaaatgatcaagaatcatgctgctgatgagtcaaatacaccgat |
216 |
Q |
| |
|
||| ||| | |||| | ||| || | || |||||||| ||| | |||||||||||||||||||||| || ||||||| | ||| || |
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| T |
11547571 |
caaatctttgtggctacatagaacaactaaaactttttgggaaaccttttttgtctcaaatgatcaagaatcatgttg------agtcaaacaaaccaat |
11547478 |
T |
|
| Q |
217 |
ttcttgtattgtaaacaatccttttcttccttgggtttgtgatgtagct |
265 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
11547477 |
ttcttgtatcataaacaatccttttgttccttgggtttgtgatgtagct |
11547429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 48618046 - 48618138
Alignment:
| Q |
168 |
tttctcaaatgatcaagaatcatgctgctgatgagtcaaatacaccgatttcttgtattgtaaacaatccttttcttccttgggtttgtgatgtagctg |
266 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| | ||| |||| ||||| |||||||||||||| |||| ||||||||||||||||||| |
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|
| T |
48618046 |
tttctcaaatgatcaagaatcatgctgat------tcaaacaaaccattttcatgtatcataaacaatccttttgttccatgggtttgtgatgtagctg |
48618138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 48640338 - 48640256
Alignment:
| Q |
19 |
taacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacgacggtttatcagatg |
101 |
Q |
| |
|
||||||||||||||| |||| || | |||| ||||| ||||| || |||| ||||||||||||||||| |||||| |||||| |
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|
| T |
48640338 |
taacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgacgatggtttaccagatg |
48640256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 265
Target Start/End: Complemental strand, 48661856 - 48661750
Alignment:
| Q |
153 |
ttgggaaaaagtttctttctcaaatgatcaagaatcatgctgctgatgagtcaaatacaccgatttcttgtattgtaaacaatccttttcttccttgggt |
252 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||||||||| ||| ||||| | ||| ||||| ||| | |||||||||| |||||||| ||||| |
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| T |
48661856 |
ttgggagacagtttgtttctcaaatgatcaagaatcatgc------tgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggt |
48661763 |
T |
|
| Q |
253 |
ttgtgatgtagct |
265 |
Q |
| |
|
||||||| ||||| |
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|
| T |
48661762 |
ttgtgatatagct |
48661750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 48629155 - 48629064
Alignment:
| Q |
168 |
tttctcaaatgatcaagaatcatgctgctgatgagtcaaatacaccgatttcttgtattgtaaacaatccttttcttccttgggtttgtgatgtagct |
265 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||| || ||| ||||| ||||| || |||||||||||||||| |||||||| ||||||||| |
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|
| T |
48629155 |
tttctaaaatgatcaagaatcatgctgat------tcaagtaaaccaatttcatgtatcatatacaatccttttcttccatgggtttgcgatgtagct |
48629064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 48617889 - 48617986
Alignment:
| Q |
11 |
agaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacgacggtttatcagatgatgatcc |
108 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||| | || ||||| |||||||||| | || |||||||| || || |||||| ||||||| |||| |
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| T |
48617889 |
agaactgttaacaatatcattgaaaaatcactcacttcaattggtgatggttctcttacttttgagttcttagatgatggtttagaagatgatcatcc |
48617986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 48585765 - 48585685
Alignment:
| Q |
19 |
taacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgacgacggtttatcaga |
99 |
Q |
| |
|
||||||||||||||| |||| || | |||| ||||| ||||| || |||| |||||||||||||| || |||||| |||| |
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|
| T |
48585765 |
taacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgatgatggtttaccaga |
48585685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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