View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3682_low_3 (Length: 269)

Name: NF3682_low_3
Description: NF3682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3682_low_3
NF3682_low_3
[»] chr7 (11 HSPs)
chr7 (16-265)||(7878572-7878821)
chr7 (16-261)||(8589718-8589963)
chr7 (46-237)||(8383746-8383937)
chr7 (58-237)||(8601093-8601272)
chr7 (16-259)||(8544713-8544956)
chr7 (54-261)||(8609035-8609242)
chr7 (45-261)||(8580806-8581022)
chr7 (138-260)||(8569513-8569635)
chr7 (68-261)||(29578518-29578711)
chr7 (39-265)||(8575402-8575628)
chr7 (138-261)||(29582687-29582810)
[»] chr8 (1 HSPs)
chr8 (105-262)||(12527673-12527830)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 7878821 - 7878572
Alignment:
Q  16 cagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcatt 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878821 cagaattgatttccaatttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcatt 7878722  T
Q  116 cactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878721 cactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattt 7878622  T
Q  216 tcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878621 tcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgc 7878572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 8589718 - 8589963
Alignment:
Q  16 cagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcatt 115  Q
    |||||||||||  |||||| ||||||| ||| ||||| ||||  || || |||||||||||||||||||||||    ||||  ||||| || ||||||||    
T  8589718 cagaattgattctcactttgtcaacagaagtaagcttggaagctacactgtcatccttcattactttcctcatgtcgtaaagataatcatctaaagcatt 8589817  T
Q  116 cactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattt 215  Q
    || ||||||||| |||| || |  |||||||||||||| |||||||| ||||||||| |  ||| |||||||||||||||| ||||  ||||||||||||    
T  8589818 cattgctctaactttcttcacatgcttcatgtcttcagccttgaagtgctcagcttcctggatcattctctcaatttcttcgcttgtcagtcttccattt 8589917  T
Q  216 tcattcgtaattgtaatttctttcttgttaccacttgtttcttcct 261  Q
    ||||| || |||||||| | ||| || ||||||||  |||||||||    
T  8589918 tcattggttattgtaatattttttttattaccactgctttcttcct 8589963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 8383937 - 8383746
Alignment:
Q  46 tgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcat 145  Q
    ||||| |||||||||| |||||||| |||||||||||||||||  | ||||  ||||| ||||||||||||| |||| |||| |||| ||||||||||||    
T  8383937 tgagcattgaagtaacactatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcat 8383838  T
Q  146 gtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 237  Q
    |||||||| |||||| | ||| || ||||  ||| ||||||||||||| ||  ||||||  ||||||||||||||| | |||||||| ||||    
T  8383837 gtcttcagccttgaaattctctgcctcttggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatctt 8383746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 237
Target Start/End: Original strand, 8601093 - 8601272
Alignment:
Q  58 taacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagactt 157  Q
    |||| |||||||||||||||||||| |||||  | ||||  ||||| |||| | |||||| |||| |||| |||| | | |||||||||||||||   ||    
T  8601093 taacactatcatccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaacttcatgtcttcatcttt 8601192  T
Q  158 gaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 237  Q
    ||| | |||||||||||  ||| ||||||||||||||||  ||||||||||||| ||||||||||| |||||||||||||    
T  8601193 gaaattctcagcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgtaatttctt 8601272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 8544713 - 8544956
Alignment:
Q  16 cagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcatt 115  Q
    |||||||||| | || ||| || ||||| | |||||| ||| |||| | |||||||||||||||||||||||   | ||||  |||| ||||||||||||    
T  8544713 cagaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactttcctcacattgtaaagataatactccaaagcatt 8544812  T
Q  116 cactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattt 215  Q
       ||||  ||| || |   | ||||||||||||| || |||||| |  |||||||| |  ||| |||||||||||||||||||||||| ||||||||||    
T  8544813 tcttgcttcaactttttttctgaacttcatgtcttgagccttgaaattgtcagcttcctggatcattctctcaatttcttcccttgataatcttccattt 8544912  T
Q  216 tcattcgtaattgtaatttctttcttgttaccacttgtttcttc 259  Q
    ||| | || ||||||||||| |||||  ||||||| ||||||||    
T  8544913 tcaatagttattgtaatttcattcttactaccactggtttcttc 8544956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 261
Target Start/End: Original strand, 8609035 - 8609242
Alignment:
Q  54 gaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcag 153  Q
    |||||||| ||  |||||||||||||||||| |||  | |||| |||||| |||||| |||||| |||| |||| ||||   ||||||||| ||||||      
T  8609035 gaagtaacactcccatccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcct 8609134  T
Q  154 acttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgt 253  Q
      ||||| | ||||||||||| |||| ||||||||||||||||  |||| ||||  |||||||| || || || ||||| |||||||| |||||||| ||    
T  8609135 ctttgaaattctcagcttcttgaatcattctctcaatttcttcagttgaaagtcgaccattttcctttgttatagtaatatctttcttattaccactggt 8609234  T
Q  254 ttcttcct 261  Q
    ||||||||    
T  8609235 ttcttcct 8609242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 261
Target Start/End: Original strand, 8580806 - 8581022
Alignment:
Q  45 gtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttca 144  Q
    |||||||||||| |||| | || ||||| |||||||||||||| | | ||||  ||||| ||||||||||| | |||| |||| |||| | | |||| ||    
T  8580806 gtgagctttgaactaacacaattatcctccattactttcctcactttgtaaagataatcgtccaaagcatttattgctttaactttcttcttgaactcca 8580905  T
Q  145 tgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgtt 244  Q
    |||||| || ||| ||    ||||||| |  |||| || |||||||||| || ||||| |||||||||||||||||||| ||||||||  | |||||  |    
T  8580906 tgtcttgagccttaaaaatttcagcttgtaaaatcattttctcaatttcctctcttgaaagtcttccattttcattcgttattgtaatagccttcttact 8581005  T
Q  245 accacttgtttcttcct 261  Q
    | || ||||||||||||    
T  8581006 agcatttgtttcttcct 8581022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 260
Target Start/End: Original strand, 8569513 - 8569635
Alignment:
Q  138 aacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 237  Q
    ||||||||||||| || |||||| | ||||||||| |  ||| |||||||||||| | ||||||||| |||||| || ||||| || ||||||||||| |    
T  8569513 aacttcatgtcttgagccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttctcattagttattgtaatttcat 8569612  T
Q  238 tcttgttaccacttgtttcttcc 260  Q
    | || || ||||| |||||||||    
T  8569613 ttttattgccactggtttcttcc 8569635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 29578711 - 29578518
Alignment:
Q  68 atccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactca 167  Q
    ||||| ||||||||| ||| || | ||||  ||||| ||||||||||| || |||||| | |||||   ||||||||| ||||||  |||||| | ||||    
T  29578711 atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctca 29578612  T
Q  168 gcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcct 261  Q
    |||||||  ||| ||| |||||||||||   |||| ||||||| ||| ||||| || ||||| || ||  |||| || ||| ||||||||||||    
T  29578611 gcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcct 29578518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 265
Target Start/End: Original strand, 8575402 - 8575628
Alignment:
Q  39 acaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataa 138  Q
    ||||| ||||||||||||  ||| | |||||||||||||| |||||||    | | ||  ||||| ||||| ||||| | |||| |||| |||| | | |    
T  8575402 acaggggtgagctttgaaccaacaccatcatccttcattaatttcctcgcattgtgaagataatcgtccaatgcatttattgctgtaactttcttcttga 8575501  T
Q  139 acttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttcttt 238  Q
    ||| |||||||| || ||||||    |||||||||| |||| ||||| |||||||||   | |||||||| |  | || |||||| |||| |||  ||||    
T  8575502 actccatgtcttgagccttgaaaatttcagcttcttgaatcattctcgcaatttcttgagtcgatagtctacagtattgattcgtcattgcaataccttt 8575601  T
Q  239 cttgttaccacttgtttcttcctttgc 265  Q
    ||| | |||||||||||||||||||||    
T  8575602 cttataaccacttgtttcttcctttgc 8575628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 261
Target Start/End: Complemental strand, 29582810 - 29582687
Alignment:
Q  138 aacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 237  Q
    |||||||  ||||||  |||||| | ||| |||||||  ||| ||||||||||||||||  |||| | |||||||||| |||| || |||||||| ||||    
T  29582810 aacttcagatcttcaaccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctctt 29582711  T
Q  238 tcttgttaccacttgtttcttcct 261  Q
    | || || ||| | ||||||||||    
T  29582710 ttttatttccagtggtttcttcct 29582687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 262
Target Start/End: Original strand, 12527673 - 12527830
Alignment:
Q  105 tccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgata 204  Q
    ||||||||||| | |||| |||| ||||   | |||||||| ||||||| |||||| | ||||||||| |  ||| ||||| |||||||||| |||||||    
T  12527673 tccaaagcattgattgctttaactttctttttgaacttcatatcttcagccttgaaattctcagcttcctggatcattctcccaatttcttcacttgata 12527772  T
Q  205 gtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctt 262  Q
     ||||||||||||||| || |||||||| |||||||| |||||||| |||| ||||||    
T  12527773 atcttccattttcatttgttattgtaatatctttcttattaccactggttttttcctt 12527830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University