View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_high_10 (Length: 536)
Name: NF3683_high_10
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 25873836 - 25873320
Alignment:
| Q |
1 |
ttgaagcattttttatggtttctaattattagaagcccaacgtaacaaaatactataatataattgcattggttcaggttctccaggttgaaccatcgca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
25873836 |
ttgaagcattttttatggtttctaattattagaagcccaacgttacaaaatactataatataattgcattggttcaggttctccaggttgaaccatggta |
25873737 |
T |
|
| Q |
101 |
caagtcaaacaggaaattatcaaaattgaaatgtactcccatattaacacttggaaagttgcaacttgcaagagccacaattggttctatatatcccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25873736 |
caagtcaaacaggaaattatcaaaattgaaatgtactcccatattaacacttggaaagttgcaacttgcaagagccacaattggttctatatatcccttt |
25873637 |
T |
|
| Q |
201 |
acaaatttgtatgacattttttcaagtccaacatcttgtttttccttcatttatttatggtcaaggggtgaagtgttaattcatgtttgattatatgaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25873636 |
acaaatttgtatgacattttttcaagcccaacatcttgtttttccttcatttatttatggtcaaggggtgaagtgttaattcatgtttgattatatgaaa |
25873537 |
T |
|
| Q |
301 |
tagaaaagttatattaaaagattaaaattaattttgacatgattgagtattctcaaactgaattctcttgccttctaaataaaagtttggattttagccg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25873536 |
tagaaaagttatattaaaagattaaaattaattttgacatgtttgagtattctcaagctgaattctcttgccttctaaataaaagtttggattttagccg |
25873437 |
T |
|
| Q |
401 |
tctaacattgtatacgaacataactttgtaacttttatgaggagaaagaaattgttatcaacaaggatcaagtcatgaacctccttcttaaacttcttca |
500 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
25873436 |
tctaacattatatacgaacataactttgtaacttttatgaggagaaagaaattgttatcaatagggatcaagtcatgaacctccttcttaaacttcttca |
25873337 |
T |
|
| Q |
501 |
acgtcccatacatttgt |
517 |
Q |
| |
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||||||||||||||||| |
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| T |
25873336 |
acgtcccatacatttgt |
25873320 |
T |
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