View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_high_11 (Length: 535)
Name: NF3683_high_11
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 29299000 - 29298480
Alignment:
| Q |
1 |
tcttactataagcattgtgtcaagcttctgcagtgctgggagattgatataaatatctgaccttggcctgcttttcatcatctgaaagagaaccccatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29299000 |
tcttactataagcattgtgtcaagcttctgcagtgctgggagattgatataaatatctgaccttggcctgcttttcatcatctgaaagagaacaccatat |
29298901 |
T |
|
| Q |
101 |
tagagatcacaaacaggtttcatcgaagttatagctatcatttggctccactgtgaaggagacaatatgaacataataacaactattatactaatatttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29298900 |
tagagatcacaaacaggtttcatcgaagttatagctatcatttggctccactgtgaaggagacaatacgaacataataacaactattatactaatatttg |
29298801 |
T |
|
| Q |
201 |
tctataaaaagaatatcatttggcaaacaaaaatcacctccacaattgtgccatcttctaaatattgtgcagttggggcaaattcttgtatgtaatcaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29298800 |
tctataaaaagaatatcatttggcaaacaaaaatcacctccacaattgtgccatcttctaaatattgtgcagttggggcaaattcttgtatgtaatcaca |
29298701 |
T |
|
| Q |
301 |
cacagatagaagaactttcatttctcttttccacatgattttcttctcaggcttcagcggctccaactttaagctttgtccgaatactgtcgctacagaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29298700 |
cacagatagaagaactttcatttctcttttccacatgattttcttctcaggcttcagcggctccaactttaagctttgtccgaataccgtcgctacagaa |
29298601 |
T |
|
| Q |
401 |
tttccaaacacaaacatgttcaattacaaataaccctttcnnnnnnnatttatcatactatgctatgaagacatgagagaattaccatagagattggtaa |
500 |
Q |
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| T |
29298600 |
tttccaaacacaaacatgttcatttacaaataaccctttctttttttatttatcatactatgctatgaagacatgagagaattaccatagagattggtaa |
29298501 |
T |
|
| Q |
501 |
tggcatttgagattgtaactg |
521 |
Q |
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||||||||||||||||||||| |
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| T |
29298500 |
tggcatttgagattgtaactg |
29298480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 236 - 387
Target Start/End: Original strand, 11476332 - 11476483
Alignment:
| Q |
236 |
acctccacaattgtgccatcttctaaatattgtgcagttggggcaaattcttgtatgtaatcacacacagatagaagaactttcatttctcttttccaca |
335 |
Q |
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|||||||||||||| ||||| || || |||||||||||||| ||||||||| |||||||||||||||||| | |||| ||||||||||||||||||| |
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| T |
11476332 |
acctccacaattgtaccatcatccaagtattgtgcagttggtgcaaattctactatgtaatcacacacagacataagacaattcatttctcttttccaca |
11476431 |
T |
|
| Q |
336 |
tgattttcttctcaggcttcagcggctccaactttaagctttgtccgaatac |
387 |
Q |
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| T |
11476432 |
tagctttcttctcaggctttagaggctccaacttcaaattttgtccaaatac |
11476483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 11476094 - 11476182
Alignment:
| Q |
1 |
tcttactataagcattgtgtcaagcttctgcagtgctgggagattgatataaatatctgaccttggcctgcttttcatcatctgaaaga |
89 |
Q |
| |
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||||||||||||||| |||||||||||||| || ||||| || || ||||||||||||| |||||| || ||| ||||||||||||||| |
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| T |
11476094 |
tcttactataagcatcgtgtcaagcttctgtagagctggaaggtttatataaatatctgcccttggtctacttgtcatcatctgaaaga |
11476182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 521
Target Start/End: Original strand, 11476792 - 11476833
Alignment:
| Q |
480 |
aattaccatagagattggtaatggcatttgagattgtaactg |
521 |
Q |
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|||||||||||||||||||||| | |||||| |||||||||| |
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| T |
11476792 |
aattaccatagagattggtaattgaatttgatattgtaactg |
11476833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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