View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3683_high_13 (Length: 471)
Name: NF3683_high_13
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 125 - 458
Target Start/End: Complemental strand, 49073608 - 49073267
Alignment:
| Q |
125 |
acgaggacgatctcctcttcttcactcccaactcacaaacccatctcaacccatagaatccgattgttgtgtggcttttcaaccttt--------tatgc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |
|
|
| T |
49073608 |
acgaggacgatctcctcttcttcactcccaactcacaaacccatctcaacccatagagtccgattgttgtgtggcttttcaacctatatatatattatgt |
49073509 |
T |
|
| Q |
217 |
gatttttcatcccaatatgtggttttctttggtgacttggctacaaaaagtaaaagtgaatgaaaaataagaattggatgtagaagtatagtctgtcaat |
316 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49073508 |
ggtttttcatcccaatatgtggttttctttggtgactcggctacaaaaagtaaaagcgaatgaaaaataagaattggatgtagaagtatagtccgtcaat |
49073409 |
T |
|
| Q |
317 |
ggaaatcaattccctagcaatcaatctaaatccaacctctctctcacacacacagtcaagaataaaataaaatccataaattgatgttttaaaggttaat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49073408 |
ggaaatcaattccctagcaatcaatctaaatccaacctctctctcacacacacagtcaagaataaaataaaatccataaattgatgttttgaaggttaat |
49073309 |
T |
|
| Q |
417 |
gaattttatcttttaaatttttgaagaaaggaagatgaaaat |
458 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49073308 |
gaattttatcttttaattttttgaagaaaggaagatgaaaat |
49073267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 446
Target Start/End: Original strand, 9301969 - 9302021
Alignment:
| Q |
395 |
aattgatgtttta-aaggttaatgaattttatcttttaaatttttgaagaaag |
446 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| || |||||||||| |
|
|
| T |
9301969 |
aattgatgtttttgaagtttaatgaattttatcttttaatttgttgaagaaag |
9302021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University