View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_high_15 (Length: 416)
Name: NF3683_high_15
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 38565754 - 38566164
Alignment:
| Q |
1 |
gtcagaatgccaaatattggaaatatgacaccgtttcctatggcagcaaaacatccgaaaagcagaactggactctctggcttgttgagggtagcaaggc |
100 |
Q |
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| T |
38565754 |
gtcagaatgccaaatattggaaatatgacaccgtttcctatggcagcaaaacatccgaaaagcagaactggaatctctggcttgttgagggtagcaaggc |
38565853 |
T |
|
| Q |
101 |
ggcttagcggaacttcttgtcctttttctttggttggtaaattctcaagttccggatcaacagagttaattcctgttggtaaaacggatgaaactgaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
38565854 |
ggcttagcggaacttcttgtcctttttctttggttggtaaattctcaagtcccggatcaatggcgttaattcctgttggtaaaacggatgaaactgaaaa |
38565953 |
T |
|
| Q |
201 |
tgaatggcgactactattccctatagatgatcccctactaatagatctttgaagcgactttctctgactcaactgtctaaatgattcggcagaaagttct |
300 |
Q |
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| T |
38565954 |
tgaatggcgactactattccctatagatgatcccctactaatagatctttgaagcgactttctttgactcaactgtctaaatgatttggcagaaagttct |
38566053 |
T |
|
| Q |
301 |
ctcttgatttggtgatccgtagtttcttctgattccttgtttatttcttgtaagcgtacgagttgagaataagctccttcaggatccttgagtaattctg |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38566054 |
ctcttgatatggtgatccgtagtttcttctgattccttgtttatttcttgtaagcgtacgagttgagaataagctccttcaggatccttgagtagttctg |
38566153 |
T |
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| Q |
401 |
tctgtgctcct |
411 |
Q |
| |
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| |||| |||| |
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| T |
38566154 |
tgtgtgttcct |
38566164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 13 - 398
Target Start/End: Original strand, 38524592 - 38524977
Alignment:
| Q |
13 |
aatattggaaatatgacaccgtttcctatggcagcaaaacatccgaaaagcagaactggactctctggcttgttgagggtagcaaggcggcttagcggaa |
112 |
Q |
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|||||||||| |||||||||||| |||||||||| |||| ||| | ||| ||||| ||| ||||||||||||| |||| ||||||||| || ||||||| |
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| T |
38524592 |
aatattggaagtatgacaccgttagctatggcagctaaacttccaataagaagaacgggaatctctggcttgttaagggaagcaaggcgtctcagcggaa |
38524691 |
T |
|
| Q |
113 |
cttcttgtcctttttctttggttggtaaattctcaagttccggatcaacagagttaattcctgttggtaaaacggatgaaactgaaaatgaatggcgact |
212 |
Q |
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|||||||| |||||||||||||||| | || ||||| || ||||| | |||| ||||||||||||| || | ||||| ||||||||||||||||| |
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| T |
38524692 |
cttcttgttctttttctttggttggaactttttcaaggtcaggatcggcgacattaactcctgttggtaaaccgaacgaaaccgaaaatgaatggcgact |
38524791 |
T |
|
| Q |
213 |
actattccctatagatgatcccctactaatagatctttgaagcgactttctctgactcaactgtctaaatgattcggcagaaagttctctcttgatttgg |
312 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||| || || ||||||||||||||||| || |
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| T |
38524792 |
actattccctatagatgatcccctacttatagatctttgaagcgacttcctttgacttgactgtctaaaagactctgcagaaagttctctcttaccgtga |
38524891 |
T |
|
| Q |
313 |
tgatccgtagtttcttctgattccttgtttatttcttgtaagcgtacgagttgagaataagctccttcaggatccttgagtaattc |
398 |
Q |
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|| || ||||||||||||||||||||||||| ||||||||| |||| ||| || ||||||||||||||||||||||| |||||||| |
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| T |
38524892 |
tggtctgtagtttcttctgattccttgtttacttcttgtaaccgtatgagctgtgaataagctccttcaggatccttcagtaattc |
38524977 |
T |
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