View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_high_2 (Length: 702)
Name: NF3683_high_2
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_high_2 |
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| [»] scaffold0332 (2 HSPs) |
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Alignment Details
Target: scaffold0332 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: scaffold0332
Description:
Target: scaffold0332; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 191 - 692
Target Start/End: Original strand, 5774 - 6291
Alignment:
| Q |
191 |
ttttaagttttggttctgtgattgattttgcatgttggattccatagattgtttcaaaaaagctgttttcaaatttgcatggtacttgcaaggttacctg |
290 |
Q |
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| T |
5774 |
ttttaagttttggttctgtgattgattttgcatgttggattccatagattgtttcaaaaacgctgttttcaaatttgcatggtacttgcaaggttacctg |
5873 |
T |
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| Q |
291 |
ataacagtcagcttttagctcttcttcagttcctcattgttagtttgtagtacttttaattttaagcttaaccggctttcattagggtaaggtattttgg |
390 |
Q |
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| T |
5874 |
ataacagtcagcttttagctcttcttcagttcctcattgttagtttgtagtacttttaattttaagcttaaccggctttcattagggtaaggtattttgg |
5973 |
T |
|
| Q |
391 |
agtcatatgct--------------acactctaggcccgactttgtagattgagtatttccatgtgtaacttggagactaatcccatgccgagtaggatc |
476 |
Q |
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| T |
5974 |
agtcatatgctacactctaggtgctacactctaggcccgactctgtagattgagtatttccatgtgtaacttggagactaatcccaggccgagtaggatc |
6073 |
T |
|
| Q |
477 |
acataggcaataaaaccatccctcaatagttttaatgtgtgtttctagggtcacagtttgtattttatgcacagactgcacctacacgatcattgctttc |
576 |
Q |
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| T |
6074 |
acataggcgataaaaccatccctcaatagttttaatgtgtgtttctagggtcacagttcgtattttatgcacagactgcacctacacgatcattgctttc |
6173 |
T |
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| Q |
577 |
tatggattcactttgcactatact--tagatagcagaaaatgattccccctgttattatatcagtccaagaaagaatatggacagtcattttcttctatt |
674 |
Q |
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| T |
6174 |
tatggattcactttgcactatacttatagatagcagaaaatgattccccctgttattatatcagtccaagaaagaatatggacagtcattttcttctatt |
6273 |
T |
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| Q |
675 |
gaattttcattccctttg |
692 |
Q |
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| T |
6274 |
gaattttcattccctttg |
6291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0332; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 5531 - 5708
Alignment:
| Q |
19 |
ctaggtcagtatataataattgaaagtgttttcttcatattttttaaattgcagttaccatgacaatgctttcgttgcctctcgtgctttgcatatcgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5531 |
ctaggtcagtatataataattgaaagtgttttcttcatatttttgaaattgcagttaccatgacaatgctttcgttgcctctcgtgctttgcatatcgtg |
5630 |
T |
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| Q |
119 |
aattctttgaatagaactgctacattcccattgctggaggcattcttcaagtatcaggttggttagttagtgttttaa |
196 |
Q |
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| T |
5631 |
aattctttgaatagaactgctacattcccattgctggaggcattcttcaagtatcaggttggttagttagtgttttaa |
5708 |
T |
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