View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3683_high_23 (Length: 345)
Name: NF3683_high_23
Description: NF3683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3683_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 51739377 - 51739692
Alignment:
| Q |
20 |
ggtattaggcccaatgtcacatattcgatgcataaaagaaacattctttcctgccaattccatgaattactacgaagttgtgagcttcttttgtcgaata |
119 |
Q |
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| T |
51739377 |
ggtattaggcccaatgtcacatattcgatgcataaaagaaacattctttcctgccaattccatgaattactacgaagttgtgagcttcttttgtcgaata |
51739476 |
T |
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| Q |
120 |
aatttcatgtttttatttggcttagagatgaatattcaatacgcattgcgtaatctacgtttagtgagcttggtagcatgtggtggtgtggtaatgggtg |
219 |
Q |
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| T |
51739477 |
aatttcatgtttttatttggcttagagatgaatattcaatacgcattgcgtaatctacgtttagtgagcttggtagcatgtggtggtgtggtaatgggtg |
51739576 |
T |
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| Q |
220 |
taatttttggtctatctgtctcattttatttatatcaagaattaggcatcgatggttcaaggttttatttctgtatgattattatgttagttgtatcata |
319 |
Q |
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| T |
51739577 |
taatttttggtctatctgtctcattttatttatatcaagaattaggcatcgatggttcaaggttttatttctgtatgattattatgttagttgtatcata |
51739676 |
T |
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| Q |
320 |
cacaagttcccctatg |
335 |
Q |
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| T |
51739677 |
cacaagttcccctatg |
51739692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 10200069 - 10200216
Alignment:
| Q |
22 |
tattaggcccaatgtcacatattcgatgcataaaagaaacattctttcctgccaattccatgaattactacgaagttgtgagcttcttttgtcgaataaa |
121 |
Q |
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| T |
10200069 |
tattaggtccaatgtctcatattccatatataaaagagacattctttccagccagttccataaattactatcaagtagtgagcttcttttgtcgcataaa |
10200168 |
T |
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| Q |
122 |
tttcatgtttttatttggcttagagatgaatattcaatacgcattgcg |
169 |
Q |
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| T |
10200169 |
tttcatgtttttatttggcttggaaatgaatattcactacacattgcg |
10200216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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